PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010913389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 593aa MW: 62998.1 Da PI: 8.1642 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.7 | 1.1e-09 | 169 | 193 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tC +G++CkF H+ XP_010913389.1 169 GEKDCAHYMLTRTCTFGNSCKFDHP 193 7889********************8 PP | |||||||
2 | zf-CCCH | 37.1 | 5.2e-12 | 220 | 246 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t Ck+G+rCkF+H++ XP_010913389.1 220 PGEPDCPYYMKTQKCKFGSRCKFNHPK 246 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.7 | 7.9e-13 | 272 | 296 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+f+a+tG Ck+G++CkF+H++ XP_010913389.1 272 EPLCSFYAKTGKCKFGPNCKFHHPK 296 79*********************96 PP | |||||||
4 | zf-CCCH | 37.8 | 3.3e-12 | 350 | 375 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ XP_010913389.1 350 PGEADCPFYLKTGSCKYGATCRYNHP 375 57899********************9 PP | |||||||
5 | zf-CCCH | 31.6 | 2.8e-10 | 490 | 509 | 7 | 26 |
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 +++++tG Ck+G+rCkF+H+ XP_010913389.1 490 HYYMKTGLCKFGERCKFHHP 509 59*****************8 PP | |||||||
6 | zf-CCCH | 38.8 | 1.6e-12 | 541 | 564 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tGtCk+G +CkF H+p XP_010913389.1 541 VICSFYLKTGTCKFGTTCKFDHPP 564 68********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.699 | 167 | 195 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.018 | 167 | 194 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-5 | 168 | 194 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-7 | 169 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 219 | 247 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-6 | 219 | 246 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 221 | 246 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 224 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 225 | 247 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.69 | 269 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-7 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 272 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 272 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-7 | 274 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 349 | 377 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-7 | 349 | 376 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-10 | 351 | 375 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 353 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 355 | 374 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.43 | 487 | 510 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-5 | 490 | 512 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 490 | 509 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.652 | 490 | 511 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 491 | 509 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 537 | 565 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 537 | 564 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-5 | 541 | 564 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 541 | 564 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 542 | 562 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MSNQIYNYSS SYGGGGGTSS FYSLRATNPY LSDGGSSRLS SVDSLAAADT GMYSDRMSSL 60 YSKSGDGSLR LSGSDIAGYG AAGSLSAAGK IGGGIGTAPA SRALFASSSL DPMVVGGAKR 120 SVEALYNQSI LGSHNTIGQS DAPFSSNSLV KRSRLETASN LPIYPQRPGE KDCAHYMLTR 180 TCTFGNSCKF DHPIWVPEGG IPDWKEIPLV PASESLPEKP GEPDCPYYMK TQKCKFGSRC 240 KFNHPKDKLN ASADEVGGEG TENSVLPERP SEPLCSFYAK TGKCKFGPNC KFHHPKDLKI 300 PPDGEDTDKM GEMESEKNDG SAGGDPKLAK AHVSITPALL HNSKGLPIRP GEADCPFYLK 360 TGSCKYGATC RYNHPDRNSF NPPLASALGQ AIMPSPATNL PFGVLDPAAS FLQNINLQSA 420 QASLGVIPTV YPQRPGEIEC DVRIDSILFV LGLLTASRAH LTLGPITRVA KNASLYTVSL 480 SLMLASFYSH YYMKTGLCKF GERCKFHHPI DRSAPMSDAK QAPQQNVKLT LAGLPRREGA 540 VICSFYLKTG TCKFGTTCKF DHPPPGEAIA MATSQGTGSG TGTGVFSTES GEN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913389.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-178 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2H3Y0M1 | 0.0 | A0A2H3Y0M1_PHODC; zinc finger CCCH domain-containing protein 8-like | ||||
STRING | XP_008791420.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-165 | floral homeotic protein (HUA1) |