PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913373.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 449aa    MW: 48230.5 Da    PI: 5.9613
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913373.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-073984312154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010913373.1 398 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 431
                     469*****************************87 PP
2ELK28.73e-10352373122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_010913373.1 352 ELKHELKQGYKEKIVDIREEIL 373
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.2E-19184228IPR005540KNOX1
PfamPF037901.5E-17186227IPR005540KNOX1
SMARTSM012569.0E-28239294IPR005541KNOX2
PfamPF037913.2E-20243293IPR005541KNOX2
SMARTSM011886.1E-4352373IPR005539ELK domain
PfamPF037891.1E-6352373IPR005539ELK domain
PROSITE profilePS512139.969352372IPR005539ELK domain
PROSITE profilePS5007111.531372435IPR001356Homeobox domain
SMARTSM003896.2E-11374439IPR001356Homeobox domain
SuperFamilySSF466897.27E-16374438IPR009057Homeodomain-like
CDDcd000861.08E-11375436No hitNo description
Gene3DG3DSA:1.10.10.606.6E-25379436IPR009057Homeodomain-like
PfamPF059203.3E-17392431IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAFHNHLLQY AEQRLGDGPV VLGTMDQLGG QPSSSSDASP AAKDRLVAEA AGKPPLAGGR  60
GPTWLNSAIL RQQGHQYVDG SFLHLQTTSD SSASPAGGAT TSGGGVGQWP RPAILQRSGS  120
DDEVPVSSDS MIAAAISTDA GGSGQQAHGG AEMGEGEAGV QGVAGGAGGG GAGEHVGEGS  180
WQNARYKAEI LGHPLYEQLL SAHVACLRIA TPVDQLPRID AQLAQSQHVV AKYSVLGHGN  240
QMLGDDKELD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWELEQSLQ SLTGVSPGEG  300
TGATMSDDDD DQADSDTNLF DGSLGDGSDS MGFGPLIPTE SERSLMDRVR QELKHELKQG  360
YKEKIVDIRE EILRKRRAGK LPGDTTSTLK AWWQSHSKWP YPTEDDKARL VQETGLQLKQ  420
INNWFINQRK RNWHNNPSSS SALKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428448RKRNWHNNPSSSSALKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913371.10.0homeobox protein knotted-1-like 11 isoform X1
RefseqXP_019704123.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3YQK30.0A0A2H3YQK3_PHODC; homeobox protein knotted-1-like 13 isoform X2
STRINGXP_008802008.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-152KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]