PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010913103.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 539aa MW: 58134.7 Da PI: 5.9362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010913103.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.9e-09	368	415	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010913103.1 368 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 415 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-17	362	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.08E-11	362	419	No hit	No description
PROSITE profile	PS50888	15.663	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-17	364	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-6	368	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MEKERFCSTT PPLTWQSGNP LPPPEPEMTS LPGADRFHNL NWDRPMDRSA PFESALSSLV 60 SSPSSNLATT AASDSVVLHE LICRLGSICN SDEISLTSCY QSANTSCSST PLNSPPKLNL 120 SMMEHYQQSS RGLPVSRNPA MPTLHLAPFT TDPGFAERAV RFSCFGGRSY GGLTGQFGLP 180 EIGKMSRVSS SQSFMGSGCQ MGISDNGQEI AMQEGVQVEM EMRYRLGGRM SGSSTPDNGE 240 FGGGQEESSA DQITAGGETS SRGNKENNAR KRKAAPKGKG KEAPLSSSGT NPSKIAEEED 300 SNAKRSKPAE TNGTDQDVAA KPKAEQNGGA SSGGDAGQKL GKENNAKPPE PPKDYIHVRA 360 RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF 420 LSMKLATVNP QLDFSMENLL PKDVYPLEAI STAFSCPHQP QGNPLQSVVT NGLENQCSLN 480 PLNSSLRRSL NMQLPPFDGS GDATSQLGTF WEDDLQSFIQ MGFGQSQENS FSSQGFHGK

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MEKERFCSTT PPLTWQSGNP LPPPEPEMTS LPGADRFHNL NWDRPMDRSA PFESALSSLV  60
SSPSSNLATT AASDSVVLHE LICRLGSICN SDEISLTSCY QSANTSCSST PLNSPPKLNL  120
SMMEHYQQSS RGLPVSRNPA MPTLHLAPFT TDPGFAERAV RFSCFGGRSY GGLTGQFGLP  180
EIGKMSRVSS SQSFMGSGCQ MGISDNGQEI AMQEGVQVEM EMRYRLGGRM SGSSTPDNGE  240
FGGGQEESSA DQITAGGETS SRGNKENNAR KRKAAPKGKG KEAPLSSSGT NPSKIAEEED  300
SNAKRSKPAE TNGTDQDVAA KPKAEQNGGA SSGGDAGQKL GKENNAKPPE PPKDYIHVRA  360
RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP QLDFSMENLL PKDVYPLEAI STAFSCPHQP QGNPLQSVVT NGLENQCSLN  480
PLNSSLRRSL NMQLPPFDGS GDATSQLGTF WEDDLQSFIQ MGFGQSQENS FSSQGFHGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029118510.1	0.0	transcription factor bHLH78 isoform X2
TrEMBL	A0A2H3ZGH6	0.0	A0A2H3ZGH6_PHODC; transcription factor bHLH62-like isoform X4
STRING	XP_008813504.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	8e-59	bHLH family protein