PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913057.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 317aa    MW: 35772.1 Da    PI: 6.9083
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913057.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++++  +G g+W++++r+ g+ R++k+c++rw +yl
   XP_010913057.1 14 RGLWSPEEDEKLIKYISTYGHGCWSSVPRRAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding52.21.4e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++
   XP_010913057.1  67 RGSFSPQEESLIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.942961IPR017930Myb domain
SuperFamilySSF466898.99E-3012108IPR009057Homeodomain-like
SMARTSM007173.7E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
CDDcd001675.56E-131761No hitNo description
PROSITE profilePS5129426.21862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002492.1E-1567110IPR001005SANT/Myb domain
CDDcd001672.26E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGHHSCCNKQ KVRRGLWSPE EDEKLIKYIS TYGHGCWSSV PRRAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEESLIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS TIKKKLMSHA  120
MDGVNPISST GDELLPMRSY INQLFCAQDH YYTLDATSTP HGYDGHDMTA YIVDRACAPS  180
PLQASYSSTW PSDPRQLHQN PNDHRHRVEG YAGAPVYNDE IVSLRYAETQ CSSSKFVVAY  240
DQSVDTQECT IPSLSVSHEI DANAGLPSFL TLPHQYKPPD STNPMDFMDM IMGSSSSGEV  300
SDDSLAMIPS LQPHWVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913057.10.0transcription factor MYB26-like
TrEMBLA0A2H3WXG91e-178A0A2H3WXG9_PHODC; transcription factor MYB83-like
STRINGXP_008775155.11e-179(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128133035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.24e-79myb domain protein 26