PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913035.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 345aa    MW: 37559.8 Da    PI: 6.8228
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913035.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.6e-41291291101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkC++dC+lapyfpa+qp++f n+h+lFG+s++lk+++++++ +r+dam+s++++++ara+dPv G++++i++ + ql++ +aela
  XP_010913035.1  29 ACAACKYQRRKCPPDCTLAPYFPASQPRQFLNAHRLFGVSKILKMIHHIDPRHRPDAMRSIIFQSNARAQDPVGGCYRIIRDFECQLQRDNAELA 123
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     l++++l
  XP_010913035.1 124 LIHRQL 129
                     *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.47228129IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3729125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTIGSSSSKT SATISHHPPS SSTTSSTQAC AACKYQRRKC PPDCTLAPYF PASQPRQFLN  60
AHRLFGVSKI LKMIHHIDPR HRPDAMRSII FQSNARAQDP VGGCYRIIRD FECQLQRDNA  120
ELALIHRQLA FCRARARNQA NLSPADLNDL PVLLPNPPDD DDGGNNLPNL LLNPPDNDGA  180
NNLPNLLLNP PDNDGANNLP NVPLNPPDDD RGGGASYDSH LVQPQQYLCD FCCYGGGGGS  240
DHDDYGYADN MSLSITDSLK NSKNGLNLPA SQQQQKNCAV EEQNAKPVVD MFDVRQDIAS  300
GDSSRNNADA CTRTKMSKRR PRHDLSGAAS LLTLTNSTGG WITMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-25221294111LOB family transfactor Ramosa2.1
5ly0_B3e-25221294111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117257.17e-99uncharacterized protein LOC105038825
TrEMBLA0A2H3X8164e-68A0A2H3X816_PHODC; LOB domain-containing protein 7-like
STRINGXP_008779803.15e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.19e-39LOB domain-containing protein 22