PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913029.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 271aa    MW: 31105.9 Da    PI: 5.4141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913029.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l++ +   G ++W+++++  g+ R++k+c++rw +yl
   XP_010913029.1 14 RGPWTVEEDQKLINFIMNNGIHCWRLVPKLAGLMRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.11.5e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ ++++++  lG++ W++Ia++++ gRt++++k++w++
   XP_010913029.1  67 RGAFSEDEENQIIQLHSCLGNR-WSKIASYFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.863961IPR017930Myb domain
SuperFamilySSF466892.59E-2911108IPR009057Homeodomain-like
SMARTSM007175.8E-111363IPR001005SANT/Myb domain
PfamPF002491.4E-131461IPR001005SANT/Myb domain
CDDcd001677.73E-91661No hitNo description
PROSITE profilePS5129425.99862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2565116IPR009057Homeodomain-like
SMARTSM007173.9E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1567110IPR001005SANT/Myb domain
CDDcd001671.43E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTVE EDQKLINFIM NNGIHCWRLV PKLAGLMRCG KSCRLRWTNY  60
LRPDLKRGAF SEDEENQIIQ LHSCLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLKLLG  120
LDPVTHKPIE QPAKYDSSRS DCVSESNPSE VQEKSMEIMD IVSSSQEEHL MDDEKQKGQE  180
EHLMNDEKQK EVQFGSNNTI VLHGNGMSWE SLDVEEMKPQ TNPSSSFSTS FSVDDTGHAG  240
SSLCWFDTID SFPSWEALYP LEDVFPFGNF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913029.10.0myb-related protein 315-like
TrEMBLA0A2H3Z2061e-143A0A2H3Z206_PHODC; protein ODORANT1
STRINGXP_008807214.11e-143(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-79myb domain protein 40