PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913026.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 337aa    MW: 37028.8 Da    PI: 5.146
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913026.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.14e-40321311100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCa+Ck++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+++++++ +r +am+s++++++ara+dPv G++++il+l++qle+  aela
  XP_010913026.1  32 ACAVCKYQRRKCNPDCTLAPYFPADQQRQFLNAHRLFGVSNILKIIRHVDPVQRAEAMHSIIFQSNARAHDPVGGCYRIILELERQLEHDTAELA 126
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     l+ ++
  XP_010913026.1 127 LVLRQ 131
                     88655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.74631132IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3732127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSTATSSTIT ASSTRTHHPS SSSSTAQSAT QACAVCKYQR RKCNPDCTLA PYFPADQQRQ  60
FLNAHRLFGV SNILKIIRHV DPVQRAEAMH SIIFQSNARA HDPVGGCYRI ILELERQLEH  120
DTAELALVLR QLAICRAQAQ AALSPGAADV TINPNLILST GDDTGSDAIY GSHQSSLVLP  180
MQQQQQPQQQ QYYDYFYYDG GGDNPASNEH HNTNNHSMTN SNSINNNNHH NYNNAGVEME  240
VPTSSMLSLH PQQCRVDDEA VKPLVDMFED RQAFTIGDDE EESAKNFAAT VATAEPFQCS  300
GKMDLKEELN PVEDVPEHDL KGAASLFTLT NCTSSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-24221251104LOB family transfactor Ramosa2.1
5ly0_B2e-24221251104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913026.10.0LOB domain-containing protein 11-like
TrEMBLA0A2H3X8160.0A0A2H3X816_PHODC; LOB domain-containing protein 7-like
STRINGXP_008779803.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-42LOB domain-containing protein 22