PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913018.1
Common NameAGL2-3
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26731.3 Da    PI: 9.2811
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913018.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  XP_010913018.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box100.32.6e-33821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       +++++++qqe+ kLk+++e Lqr+qR+llG+dL++Ls keL+qLe+qL+ slk+iRs++++++l+q+ +lq++e++l e+nk+L+++lee
  XP_010913018.1  82 IVSRETQTSQQEYLKLKARVEALQRSQRNLLGDDLGPLSSKELEQLERQLDASLKQIRSTRTQYMLDQLADLQRREQMLCEANKSLKQRLEE 173
                     456789**********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.473161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-34289IPR002100Transcription factor, MADS-box
CDDcd002651.36E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.08787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPET NIVSRETQTS QQEYLKLKAR VEALQRSQRN LLGDDLGPLS  120
SKELEQLERQ LDASLKQIRS TRTQYMLDQL ADLQRREQML CEANKSLKQR LEESNQATQQ  180
QVWDPNAPAV GYGRQPPQPQ GDGFYQQIEY PPEQITIAAA PGPSVSNYMP GWLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-40751711101Developmental protein SEPALLATA 3
4ox0_B6e-40751711101Developmental protein SEPALLATA 3
4ox0_C6e-40751711101Developmental protein SEPALLATA 3
4ox0_D6e-40751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913018.11e-172agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ386941e-135AGL9_ARADE; Agamous-like MADS-box protein AGL9 homolog
TrEMBLQ5K6A31e-168Q5K6A3_ELAGV; MADS box transcription factor
STRINGXP_008801850.11e-155(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Adam H, et al.
    MADS box genes in oil palm (Elaeis guineensis): patterns in the evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA subfamilies.
    J. Mol. Evol., 2006. 62(1): p. 15-31
    [PMID:16320117]