PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913015.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 246aa    MW: 27759.7 Da    PI: 6.5957
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913015.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.33.5e-3514110197
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaC+++r +C ++C+lapyfpa+++++f++vh+lFG++n+l l++++p e+r++am+sl+yeA a+   Pv+G++gvi +l  +++ ++ el+
  XP_010913015.1  14 ACAACRHQRSRCRPGCILAPYFPAQRTAQFNAVHRLFGVRNLLWLYNNAPSEHRDHAMKSLTYEALAWRYHPVHGCLGVIYDLYVKIDATSRELD 108
                     7****************************************************************************************999997 PP

          DUF260  96 ll 97 
                     ++
  XP_010913015.1 109 AT 110
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3113114IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-3314109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGERGESASS NIRACAACRH QRSRCRPGCI LAPYFPAQRT AQFNAVHRLF GVRNLLWLYN  60
NAPSEHRDHA MKSLTYEALA WRYHPVHGCL GVIYDLYVKI DATSRELDAT SLLLASYRRQ  120
QEEEQQQILM QQLLLAAQQQ QQQHMMMMPP PPLAPMPELH ADSFPQQQQL APLSPPLLPT  180
ILMNLDDDRG VNIGRMNERG GSSHGWRLSD EEAMRAFNPA AELLNPAADL PGMSMLVNTN  240
FLMDGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-231511712114LOB family transfactor Ramosa2.1
5ly0_B8e-231511712114LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117250.11e-138LOB domain-containing protein 21-like
TrEMBLA0A2H3YFC02e-53A0A2H3YFC0_PHODC; LOB domain-containing protein 24-like
STRINGXP_008797789.14e-46(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2943544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-24LBD family protein