PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 305aa MW: 32466.2 Da PI: 10.3959 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.6 | 2.7e-39 | 80 | 172 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....k 89 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl qa+pai+++tg+++++as+ ++ssss++s+++++ XP_010912999.1 80 APRRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPAIIAATGSGTIPASALASSSSSSAVSTPHQTnwtglG 172 7899*****************************************************************888555555555544433445553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-32 | 85 | 160 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.737 | 86 | 140 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDPKGYSTVP PEAPKFHREL GRHPEDKREP PTRIGSTTTQ QHQESSSRGG GGDLQIMMMA 60 STVPPTSVTE KEDQQRRQLA PRRSSNKDRH TKVDGRGRRI RMPALCAARI FQLTRELGHK 120 SDGETIQWLL HQAEPAIIAA TGSGTIPASA LASSSSSSAV STPHQTNWTG LGTSTSATGL 180 GRPHHQGLWR TAAASGGFNS GFLQPATSPA PSNIGFQGLE LPGGFSGGMG AMSFLSMLGG 240 PGQQMPGLEL GLSQDASMGG VLNPQVFSQF YQQMRQGRGG EGGQLHHHHQ QPLASLKDNS 300 HESTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912998.1 | 0.0 | transcription factor TCP20 | ||||
Refseq | XP_010912999.1 | 0.0 | transcription factor TCP20 | ||||
Refseq | XP_029118484.1 | 0.0 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 8e-60 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2H3YIF0 | 1e-143 | A0A2H3YIF0_PHODC; transcription factor TCP20-like | ||||
STRING | XP_008798978.1 | 1e-144 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-50 | TCP family protein |