PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22631.3 Da PI: 7.5581 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79 | 3.2e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien +rqvtf+kRr+g+lKKA ELSvLC+a++ +iifs++gklye + XP_010912876.1 10 RIENPVQRQVTFCKRRAGLLKKARELSVLCGADIGIIIFSTHGKLYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 61 | 4.7e-21 | 83 | 173 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e ++ + ++qe++ Lk+ei+ Lq+ +R + Ge+ + ++l eLq Le++Le + +iRs+K+++++++i+ l++ke l+ +n+ L++k++e XP_010912876.1 83 EVNQPQVSEQEISMLKQEINLLQKGIRYMHGEGEGHMTLGELQALERHLEIWMCHIRSTKMQIMFQEIQLLKNKEGILKAANEILQEKIAE 173 55677999********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.184 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-27 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.32E-37 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 1.1E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.6E-24 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.841 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MARGKVQMRR IENPVQRQVT FCKRRAGLLK KARELSVLCG ADIGIIIFST HGKLYELATN 60 GDMQSLIERY KSIGAEAQIE GGEVNQPQVS EQEISMLKQE INLLQKGIRY MHGEGEGHMT 120 LGELQALERH LEIWMCHIRS TKMQIMFQEI QLLKNKEGIL KAANEILQEK IAEQNGLFDI 180 GAVTAGIPYP LTIQDNIFQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-15 | 1 | 90 | 1 | 78 | MEF2C |
5f28_B | 3e-15 | 1 | 90 | 1 | 78 | MEF2C |
5f28_C | 3e-15 | 1 | 90 | 1 | 78 | MEF2C |
5f28_D | 3e-15 | 1 | 90 | 1 | 78 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912876.1 | 1e-145 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 4e-85 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 4e-85 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | M0RTL5 | 2e-97 | M0RTL5_MUSAM; Uncharacterized protein | ||||
STRING | XP_008782100.1 | 1e-130 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 3e-65 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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