PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912873.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 727aa MW: 81088.3 Da PI: 5.8973 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 7e-23 | 169 | 269 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ ++++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_010912873.1 169 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLIAGDAFIFL--RGE 259 99*****************************654444..458************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_010912873.1 260 NGELRVGVRR 269 999*****97 PP | |||||||
2 | Auxin_resp | 115.5 | 4.7e-38 | 295 | 377 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv d+ p+rW +S+WrsLk XP_010912873.1 295 ASHAISTGTLFSVFYKPRTSRSEFIISVNKYLEAKNHKLSVGMRFKMRFEGDEAPERRFSGTIIGVGDTTPSRWADSEWRSLK 377 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.14E-42 | 160 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-40 | 166 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.80E-21 | 167 | 269 | No hit | No description |
PROSITE profile | PS50863 | 11.251 | 169 | 271 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-20 | 169 | 269 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.7E-22 | 169 | 271 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.2E-36 | 295 | 377 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-6 | 593 | 635 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.193 | 598 | 691 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.62E-12 | 599 | 676 | No hit | No description |
Pfam | PF02309 | 7.6E-7 | 645 | 687 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MDAIGAFPRA DIQTLTSERE GMLEPDWVPP EGAAAADAGK GLVFSLCFFM MQFCSFSGPN 60 GDALYRELWH ACAGPLVTVP RERERVYYFP QGHMEQLEAS TNQGLDQHMP LFNLPSKILC 120 RVVHVQLRAE PDTDEVYAQI TLLPEPNQSE VTSPDLPLPE LERCTVHSFC KTLTASDTST 180 HGGFSVLRRH ADECLPPLDM SQHPPWQELV AKDLHGNEWH FRHIFRGQPR RHLLTTGWSV 240 FVSSKRLIAG DAFIFLRGEN GELRVGVRRL MRQLNNMPSS VISSHSMHLG VLATASHAIS 300 TGTLFSVFYK PRTSRSEFII SVNKYLEAKN HKLSVGMRFK MRFEGDEAPE RRFSGTIIGV 360 GDTTPSRWAD SEWRSLKVQW DEPSSIPRPD RVSPWELEPL VAATTPTSQP AQRHKRARPL 420 ASTTIAPDIS SMFGLWKSPV ESTQTFSFSG LQRGRELYPS SSLFSSTSKT GSIVFNGNMG 480 PSAVTCRSEY WPVRADTQTE SFSASINRET CEKKQDTGTG CRLFGIQLIE GSVVEETSLP 540 ANISAGIGED QPVTSVDADS DRQSQPSTIN RCDAPAVSSE PEKSCLRSPQ ETQSRQPRSC 600 TKVHMQGMAV GRAVDLTRLN CYDELLQKLE EMFSIQGELT GAVKKWQVVY TDDEDDMMLV 660 GDDPWHEFCS MVRKIYIYTH EEAKRLSSKT TLPVINEATK PGSHESSSDC DTPWSGPEDQ 720 VVADKEC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 58 | 400 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 58 | 400 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 58 | 400 | 13 | 355 | Auxin response factor 1 |
4ldx_A | 0.0 | 58 | 400 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 0.0 | 58 | 400 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019703994.1 | 0.0 | auxin response factor 7 | ||||
Swissprot | Q6YVY0 | 0.0 | ARFG_ORYSJ; Auxin response factor 7 | ||||
TrEMBL | A0A2H3Y929 | 0.0 | A0A2H3Y929_PHODC; Auxin response factor | ||||
STRING | XP_008795276.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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