PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912873.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 727aa    MW: 81088.3 Da    PI: 5.8973
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912873.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17e-23169269198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+e+       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_010912873.1 169 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLIAGDAFIFL--RGE 259
                     99*****************************654444..458************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_010912873.1 260 NGELRVGVRR 269
                     999*****97 PP

2Auxin_resp115.54.7e-38295377183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv d+ p+rW +S+WrsLk
  XP_010912873.1 295 ASHAISTGTLFSVFYKPRTSRSEFIISVNKYLEAKNHKLSVGMRFKMRFEGDEAPERRFSGTIIGVGDTTPSRWADSEWRSLK 377
                     789******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-42160298IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-40166284IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-21167269No hitNo description
PROSITE profilePS5086311.251169271IPR003340B3 DNA binding domain
PfamPF023621.2E-20169269IPR003340B3 DNA binding domain
SMARTSM010196.7E-22169271IPR003340B3 DNA binding domain
PfamPF065079.2E-36295377IPR010525Auxin response factor
PfamPF023091.2E-6593635IPR033389AUX/IAA domain
PROSITE profilePS5174527.193598691IPR000270PB1 domain
SuperFamilySSF542772.62E-12599676No hitNo description
PfamPF023097.6E-7645687IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDAIGAFPRA DIQTLTSERE GMLEPDWVPP EGAAAADAGK GLVFSLCFFM MQFCSFSGPN  60
GDALYRELWH ACAGPLVTVP RERERVYYFP QGHMEQLEAS TNQGLDQHMP LFNLPSKILC  120
RVVHVQLRAE PDTDEVYAQI TLLPEPNQSE VTSPDLPLPE LERCTVHSFC KTLTASDTST  180
HGGFSVLRRH ADECLPPLDM SQHPPWQELV AKDLHGNEWH FRHIFRGQPR RHLLTTGWSV  240
FVSSKRLIAG DAFIFLRGEN GELRVGVRRL MRQLNNMPSS VISSHSMHLG VLATASHAIS  300
TGTLFSVFYK PRTSRSEFII SVNKYLEAKN HKLSVGMRFK MRFEGDEAPE RRFSGTIIGV  360
GDTTPSRWAD SEWRSLKVQW DEPSSIPRPD RVSPWELEPL VAATTPTSQP AQRHKRARPL  420
ASTTIAPDIS SMFGLWKSPV ESTQTFSFSG LQRGRELYPS SSLFSSTSKT GSIVFNGNMG  480
PSAVTCRSEY WPVRADTQTE SFSASINRET CEKKQDTGTG CRLFGIQLIE GSVVEETSLP  540
ANISAGIGED QPVTSVDADS DRQSQPSTIN RCDAPAVSSE PEKSCLRSPQ ETQSRQPRSC  600
TKVHMQGMAV GRAVDLTRLN CYDELLQKLE EMFSIQGELT GAVKKWQVVY TDDEDDMMLV  660
GDDPWHEFCS MVRKIYIYTH EEAKRLSSKT TLPVINEATK PGSHESSSDC DTPWSGPEDQ  720
VVADKEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.05840013355Auxin response factor 1
4ldw_A0.05840013355Auxin response factor 1
4ldw_B0.05840013355Auxin response factor 1
4ldx_A0.05840013355Auxin response factor 1
4ldx_B0.05840013355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019703994.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A2H3Y9290.0A0A2H3Y929_PHODC; Auxin response factor
STRINGXP_008795276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]