PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912769.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 964aa MW: 105286 Da PI: 6.3961

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912769.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.9	4.2e-28	581	631	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF ++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_010912769.1 581 EKNISLSVLQRYFPFSLKDAAKSMGVCPTTLKRICRQHGILRWPSRKINKV 631 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.847	565	651	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-24	583	631	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-24	855	949	No hit	No description
SMART	SM00666	2.7E-23	865	947	IPR000270	PB1 domain
PROSITE profile	PS51745	24.082	865	947	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-23	865	947	No hit	No description
CDD	cd06407	9.27E-31	866	946	No hit	No description
Pfam	PF00564	1.3E-17	866	946	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MDGFLLMDNG TGGAEDPFGL SALTNFDDFG EPFSPSTADQ ICSALSDSAA AQLMPGNLVS 60 IGLPKISVAQ GLDAVTGDAK VSAGACSSSR EVASPRTSMQ FVLSPNSSGM EGIKRSNNNY 120 FASDDISNKG TSFVPMPIAG FSLPERLLRA LSLFKESLCG GILAQVWMPI KQGDVYMLST 180 SEQPFLLDQS LAGYREISRQ FTFSAKAAPG LFPGLPGRVF ISGTPEWTSN VAYYHRFEYL 240 RVDHAISHDV HGSIAVPVLD PSEASCCAVL EIVTTREKTD FDMEIDGVSQ ALEAVNLRTM 300 KARTHQQNLT KSQKSAFTEI LDVLRAVSVA HMLPLALTWV PLSYGCGSMD ECMEADVQIQ 360 SSFPRKTMLC IQEMACYVND KRMQGFLHAC AQHHLEKGQG IAGKALQSNH PFFSPDVKDY 420 EICAYPLAHH ARKYGLCAAV AIRLRSTYTG NDDYILELFL PVSCRGGEEQ QLLLNNLSST 480 MQRICKSLRT VSDAEIFGAD IARIGINWGE GIGSSSTDFS VKCSQLTDGD DEPTTEKPFE 540 NQITRPNEHG GGPFHEQHLD SMLQSKPSST RHLEKKHSTT EKNISLSVLQ RYFPFSLKDA 600 AKSMGVCPTT LKRICRQHGI LRWPSRKINK VNRSLKKIQT VINSVQGVEG ALNYDPASGC 660 LVAAVSLPEK PSMLTLEPSG RYCFPVSSAP RVETKQFIGK SEPNHSSIDG HQQVTSSQLK 720 LPNVHKCEGN ELHVAPDGRS NECKFTSTDG PLQQANTEGT SSWPINFKDI FHSSYLTKET 780 GCQHAFGKGN LSLQSLQCQI MSRGSSSMEA VDEMNAKIHA DDGIREHSHP SSSSMTDSSN 840 GSASSCPIFM KSSKSMVAAT ESGPAITVKA TYKDDTVRFK FLPSTGCHHL FEEVGKRFRL 900 LAGTFQLKYI DDEEEWVMLA SDSDLQECIE VLEYIGSHSV KLQVRDVPCA IGSSRSSNCL 960 LMES

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MDGFLLMDNG TGGAEDPFGL SALTNFDDFG EPFSPSTADQ ICSALSDSAA AQLMPGNLVS  60
IGLPKISVAQ GLDAVTGDAK VSAGACSSSR EVASPRTSMQ FVLSPNSSGM EGIKRSNNNY  120
FASDDISNKG TSFVPMPIAG FSLPERLLRA LSLFKESLCG GILAQVWMPI KQGDVYMLST  180
SEQPFLLDQS LAGYREISRQ FTFSAKAAPG LFPGLPGRVF ISGTPEWTSN VAYYHRFEYL  240
RVDHAISHDV HGSIAVPVLD PSEASCCAVL EIVTTREKTD FDMEIDGVSQ ALEAVNLRTM  300
KARTHQQNLT KSQKSAFTEI LDVLRAVSVA HMLPLALTWV PLSYGCGSMD ECMEADVQIQ  360
SSFPRKTMLC IQEMACYVND KRMQGFLHAC AQHHLEKGQG IAGKALQSNH PFFSPDVKDY  420
EICAYPLAHH ARKYGLCAAV AIRLRSTYTG NDDYILELFL PVSCRGGEEQ QLLLNNLSST  480
MQRICKSLRT VSDAEIFGAD IARIGINWGE GIGSSSTDFS VKCSQLTDGD DEPTTEKPFE  540
NQITRPNEHG GGPFHEQHLD SMLQSKPSST RHLEKKHSTT EKNISLSVLQ RYFPFSLKDA  600
AKSMGVCPTT LKRICRQHGI LRWPSRKINK VNRSLKKIQT VINSVQGVEG ALNYDPASGC  660
LVAAVSLPEK PSMLTLEPSG RYCFPVSSAP RVETKQFIGK SEPNHSSIDG HQQVTSSQLK  720
LPNVHKCEGN ELHVAPDGRS NECKFTSTDG PLQQANTEGT SSWPINFKDI FHSSYLTKET  780
GCQHAFGKGN LSLQSLQCQI MSRGSSSMEA VDEMNAKIHA DDGIREHSHP SSSSMTDSSN  840
GSASSCPIFM KSSKSMVAAT ESGPAITVKA TYKDDTVRFK FLPSTGCHHL FEEVGKRFRL  900
LAGTFQLKYI DDEEEWVMLA SDSDLQECIE VLEYIGSHSV KLQVRDVPCA IGSSRSSNCL  960
LMES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912769.2	0.0	LOW QUALITY PROTEIN: protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2H3Y180	0.0	A0A2H3Y180_PHODC; protein NLP2-like isoform X1
STRING	XP_008791812.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]