PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912603.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 322aa    MW: 36251.3 Da    PI: 10.1066
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912603.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47.1e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
   XP_010912603.1 18 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                     899*****************************.***********996 PP

2Myb_DNA-binding61.32e-1971114247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
   XP_010912603.1  71 RPFTEEEEERLLAAHHIHGNK-WALIARLFP-GRTDNAVKNHWHVV 114
                      69*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2311364IPR017930Myb domain
SMARTSM007172.5E-141766IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-2917111IPR009057Homeodomain-like
PfamPF002494.3E-171863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-271971IPR009057Homeodomain-like
CDDcd001674.88E-142162No hitNo description
PROSITE profilePS5129427.72165119IPR017930Myb domain
SMARTSM007171.1E-1669117IPR001005SANT/Myb domain
PfamPF002492.2E-1670113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2272117IPR009057Homeodomain-like
CDDcd001672.72E-881115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGSSSAATGS DDTKVCPRGH WRPGEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINK RPFTEEEEER LLAAHHIHGN KWALIARLFP GRTDNAVKNH WHVVMARRHR  120
ERSRLFGKRS SHDRILHSSD STANGIFTSC SAPQEGSNYS KHIQFDACRL FEFGSSTTDK  180
FPASPSSFSW AFSGSTISSS PQIFGAKRRG FYRSKYNYNV LGRSHFHDLS LRSSYHPYRS  240
FNALCGVADH TRVVPQSIRF SATSDGCGSE VMSATEIIRL GDSSARAMNH RADHNQQDDG  300
DRSLKKGKDV PFIDFLGVGI SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-32181184104C-Myb DNA-Binding Domain
1msf_C9e-32181184104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912603.10.0transcription factor MYB54-like
TrEMBLA0A2H3Y9660.0A0A2H3Y966_PHODC; transcription factor MYB54-like
STRINGXP_008795321.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-64myb domain protein 52