PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 36251.3 Da PI: 10.1066 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 7.1e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ XP_010912603.1 18 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 61.3 | 2e-19 | 71 | 114 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + XP_010912603.1 71 RPFTEEEEERLLAAHHIHGNK-WALIARLFP-GRTDNAVKNHWHVV 114 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.231 | 13 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-14 | 17 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.57E-29 | 17 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.88E-14 | 21 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.721 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 70 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-22 | 72 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-8 | 81 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGSSSAATGS DDTKVCPRGH WRPGEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINK RPFTEEEEER LLAAHHIHGN KWALIARLFP GRTDNAVKNH WHVVMARRHR 120 ERSRLFGKRS SHDRILHSSD STANGIFTSC SAPQEGSNYS KHIQFDACRL FEFGSSTTDK 180 FPASPSSFSW AFSGSTISSS PQIFGAKRRG FYRSKYNYNV LGRSHFHDLS LRSSYHPYRS 240 FNALCGVADH TRVVPQSIRF SATSDGCGSE VMSATEIIRL GDSSARAMNH RADHNQQDDG 300 DRSLKKGKDV PFIDFLGVGI SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-32 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-32 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912603.1 | 0.0 | transcription factor MYB54-like | ||||
TrEMBL | A0A2H3Y966 | 0.0 | A0A2H3Y966_PHODC; transcription factor MYB54-like | ||||
STRING | XP_008795321.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-64 | myb domain protein 52 |