PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 465aa MW: 51959.7 Da PI: 7.1045 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.3 | 1.5e-06 | 261 | 282 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C+k F+r+ nL+ H+r H XP_010912499.1 261 FCSICKKGFKRSANLRMHMRGH 282 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-5 | 258 | 285 | No hit | No description |
PROSITE profile | PS50157 | 11.281 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0047 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.6E-6 | 261 | 311 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 62 | 309 | 342 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 20 | 347 | 369 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MDHVQRPTFE ASFSMSNQSA NINPNQLFTQ FGAKSLSGGA GSGQSFHKYS QNLDFSSIWP 60 YDFEQVVKTP DQVAPFANNQ MGQTVDWDPR AMLSKLFFID QKIHQVQDII HSTIDIEGQF 120 SIQPNELAVK QQLVTTDLTC IISQLISTVG NLLPSINDTL LSNISPVGKI GNTVGSPSSF 180 ALNGTLQQNE DFSLEKNVVM QHRDLIRSST DSGDEGIKPV PVKNHDVKVH KDCVDRENLP 240 LGSYEVLELK KEEILAPHTH FCSICKKGFK RSANLRMHMR GHGDEYKTPA ALAKPRNEAS 300 SEPVLIKRYS CPVVGCKRNR EHEKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNTKKFSVL 360 ADLKTHEKHC GCDRWLCSCG TLFSRKDKLL GHVNLFPGHN PASSMGDVKA SGGTDQGRKI 420 EMITEIDSLE PNFPGNSVDD VDDDPCYFFP LNFDSFKFEG LNDSP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912496.1 | 0.0 | zinc finger protein STOP1 homolog isoform X1 | ||||
Refseq | XP_010912499.1 | 0.0 | zinc finger protein STOP1 homolog isoform X1 | ||||
Refseq | XP_019703619.1 | 0.0 | zinc finger protein STOP1 homolog isoform X1 | ||||
Swissprot | Q943I6 | 1e-154 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A2H3XID9 | 0.0 | A0A2H3XID9_PHODC; zinc finger protein STOP1 homolog | ||||
STRING | XP_008784214.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-134 | C2H2 family protein |
Publications ? help Back to Top | |||
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