PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912489.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 626aa MW: 65328.3 Da PI: 5.0853

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912489.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.9e-09	139	185	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 r+ WT+eEd l+ av++ G g+W+ I + +Rt+ q+ rw + XP_010912489.1 139 RKLWTKEEDMELIAAVQRCGEGNWANILKGDFkHNRTASQLSQRWTT 185 567**********************98533589***9999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.424	134	191	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-14	135	188	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.66E-13	137	189	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-10	138	189	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-7	139	185	IPR001005	SANT/Myb domain
CDD	cd11660	1.13E-14	142	188	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MLWRHLAYRD KLLDKVEDGT DPLDDDSDLE FELDASPALS GEALSDATAC AKLFISSGFS 60 RLSGPTNRAN LGTPVTRNIP DDQKPHDPSA KQKLAHTICG TNAAVPHSVQ KQPLATKRSA 120 EVSDGNGSAG SGLPAKKKRK LWTKEEDMEL IAAVQRCGEG NWANILKGDF KHNRTASQLS 180 QRWTTIRRRA NLLADSGNKS VSSTQSAERL AAQKAFSLAV DMPMTGSLSA ILSGATQSST 240 PAGSATVSAS VSEASLASAP QQASTQATSQ KVALNISHKL RTNPQKPVAP VKSSIGPNPL 300 IQAAAFAAGG RIATPSTAAS LFKAARSKCA FHIRPVGGAH QNSPIMTAKS SPTTNTVGPQ 360 PHSVRCVQPA AAVPTPASVS SVSSPTVPRH GMQQPQSSSE RPTSNPPTDS ATVPNLSTPP 420 AFPQSKPPAD SQENAESNSD ISFPIIPAID IDELLAEEVN GADEMELDGA VAKNHETDLL 480 SLDVGENGNN IVDNAACDMQ KAVAGSMDLS KSQTHENQTL NGKAISLDIG AAENKSMEID 540 AGGAQISVEE STNLANGESS ESQSMNIASA QNQIVAQERF ACTEAVADEV KQSGVQVEQH 600 AVLEDTASGN QSPVDDQAVS IAAEQD

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MLWRHLAYRD KLLDKVEDGT DPLDDDSDLE FELDASPALS GEALSDATAC AKLFISSGFS  60
RLSGPTNRAN LGTPVTRNIP DDQKPHDPSA KQKLAHTICG TNAAVPHSVQ KQPLATKRSA  120
EVSDGNGSAG SGLPAKKKRK LWTKEEDMEL IAAVQRCGEG NWANILKGDF KHNRTASQLS  180
QRWTTIRRRA NLLADSGNKS VSSTQSAERL AAQKAFSLAV DMPMTGSLSA ILSGATQSST  240
PAGSATVSAS VSEASLASAP QQASTQATSQ KVALNISHKL RTNPQKPVAP VKSSIGPNPL  300
IQAAAFAAGG RIATPSTAAS LFKAARSKCA FHIRPVGGAH QNSPIMTAKS SPTTNTVGPQ  360
PHSVRCVQPA AAVPTPASVS SVSSPTVPRH GMQQPQSSSE RPTSNPPTDS ATVPNLSTPP  420
AFPQSKPPAD SQENAESNSD ISFPIIPAID IDELLAEEVN GADEMELDGA VAKNHETDLL  480
SLDVGENGNN IVDNAACDMQ KAVAGSMDLS KSQTHENQTL NGKAISLDIG AAENKSMEID  540
AGGAQISVEE STNLANGESS ESQSMNIASA QNQIVAQERF ACTEAVADEV KQSGVQVEQH  600
AVLEDTASGN QSPVDDQAVS IAAEQD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	140	KKKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912487.1	0.0	uncharacterized protein LOC105038390 isoform X1
TrEMBL	A0A2H3XI87	0.0	A0A2H3XI87_PHODC; uncharacterized protein LOC103703208 isoform X1
STRING	XP_008784210.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	7e-34	MYB_related family protein