PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912487.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 687aa    MW: 72150.1 Da    PI: 5.2969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912487.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.11e-08200246146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 
                      r+ WT+eEd  l+ av++ G g+W+ I +     +Rt+ q+  rw +
   XP_010912487.1 200 RKLWTKEEDMELIAAVQRCGEGNWANILKGDFkHNRTASQLSQRWTT 246
                      567************************98533589*****9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.424195252IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-14196249IPR009057Homeodomain-like
SuperFamilySSF466896.56E-13198250IPR009057Homeodomain-like
SMARTSM007171.7E-10199250IPR001005SANT/Myb domain
PfamPF002491.9E-7200246IPR001005SANT/Myb domain
CDDcd116601.34E-14203249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MGTKKKGYIT EDDVSLLLQR YSATSILALL QEISQCACTK IDWNALVKRT STGITNAREY  60
QMLWRHLAYR DKLLDKVEDG TDPLDDDSDL EFELDASPAL SGEALSDATA CAKLFISSGF  120
SRLSGPTNRA NLGTPVTRNI PDDQKPHDPS AKQKLAHTIC GTNAAVPHSV QKQPLATKRS  180
AEVSDGNGSA GSGLPAKKKR KLWTKEEDME LIAAVQRCGE GNWANILKGD FKHNRTASQL  240
SQRWTTIRRR ANLLADSGNK SVSSTQSAER LAAQKAFSLA VDMPMTGSLS AILSGATQSS  300
TPAGSATVSA SVSEASLASA PQQASTQATS QKVALNISHK LRTNPQKPVA PVKSSIGPNP  360
LIQAAAFAAG GRIATPSTAA SLFKAARSKC AFHIRPVGGA HQNSPIMTAK SSPTTNTVGP  420
QPHSVRCVQP AAAVPTPASV SSVSSPTVPR HGMQQPQSSS ERPTSNPPTD SATVPNLSTP  480
PAFPQSKPPA DSQENAESNS DISFPIIPAI DIDELLAEEV NGADEMELDG AVAKNHETDL  540
LSLDVGENGN NIVDNAACDM QKAVAGSMDL SKSQTHENQT LNGKAISLDI GAAENKSMEI  600
DAGGAQISVE ESTNLANGES SESQSMNIAS AQNQIVAQER FACTEAVADE VKQSGVQVEQ  660
HAVLEDTASG NQSPVDDQAV SIAAEQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912487.10.0uncharacterized protein LOC105038390 isoform X1
TrEMBLA0A2H3XI870.0A0A2H3XI87_PHODC; uncharacterized protein LOC103703208 isoform X1
STRINGXP_008784210.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-61MYB_related family protein