PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912479.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 573aa    MW: 62523.7 Da    PI: 7.0816
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912479.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3795.1e-25116217199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvltpsd+++ g +++p+ +a+++        +++ +   +t++d +g++W++++iyr++++r++lt+GW++Fv+a++L +gD+vvF   +++
  XP_010912479.1 116 FAKVLTPSDANNGGGFSVPRFCADSIfppldmaAEPPVQ--NVTIRDIHGKVWTFRHIYRGTPRRHLLTTGWSKFVNAKKLVAGDSVVFI--KNR 206
                     89*********************999****986555555..69999********************************************..667 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                      + l+v+++r+
  XP_010912479.1 207 HGLLYVGIRRA 217
                     7779****997 PP
2Auxin_resp85.51.1e-28277360183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ a+++ +Fevv++Pras+++Fvv vekv++al+v++++GmR++m++ete  s++++  Gtv+g++  d+ +Wp S+Wr+L+
  XP_010912479.1 277 AVRLAEMGRPFEVVHYPRASAADFVVGVEKVNAALRVPWTAGMRVRMSVETEGLSRTTVfRGTVSGTTVQDQAQWPLSPWRMLQ 360
                     5778999*************************************************9999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-29105230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-37115220IPR015300DNA-binding pseudobarrel domain
CDDcd100178.01E-24116216No hitNo description
PROSITE profilePS5086313.451116218IPR003340B3 DNA binding domain
PfamPF023621.8E-23116217IPR003340B3 DNA binding domain
SMARTSM010191.7E-23116218IPR003340B3 DNA binding domain
PfamPF065071.6E-25277360IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAIDASTELP AVDPQVWRAC AGPAAKLPVV RSAVCYFPQG HAEQASSPPD FPAGGGRRPS  60
FFLCRAAAIG FHADPDTDEV FARIFLDPRP PPPLPLSPEP PSSSVEEPDD GEAAAFAKVL  120
TPSDANNGGG FSVPRFCADS IFPPLDMAAE PPVQNVTIRD IHGKVWTFRH IYRGTPRRHL  180
LTTGWSKFVN AKKLVAGDSV VFIKNRHGLL YVGIRRASRS CAGGPHDYFR YAPQAAAPPA  240
AAAPDCRSGR SEMNMGTGKG FSRNARGRIP AEAVLEAVRL AEMGRPFEVV HYPRASAADF  300
VVGVEKVNAA LRVPWTAGMR VRMSVETEGL SRTTVFRGTV SGTTVQDQAQ WPLSPWRMLQ  360
VTWDEAEVSQ HIQSVNPWQV ELDSATPQMQ TPNSDPKKPR LLQYPNLLMD AEERMFFPMT  420
GMTNKMMANV APSLFSYNMF PAGMQGARHN SISVTKLPSF APSNTDNLHF DNQCSNGMHQ  480
KTAEVPKELN VASMPQSESS SPPSQGSIHF QHMELPATAV CNPNKENIRP PFQLFGRIIH  540
IDESSDADAD ADADKGHQET TYRRVSAVEG CFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-72539444392Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912479.10.0auxin response factor 18
TrEMBLA0A3Q0HWF20.0A0A3Q0HWF2_PHODC; Auxin response factor
TrEMBLA0A3Q0HZN10.0A0A3Q0HZN1_PHODC; Auxin response factor
STRINGXP_008784257.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-112auxin response factor 16