PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912370.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 974aa MW: 107291 Da PI: 6.9886

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912370.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.2e-29	608	659	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_010912370.1 608 AEKSISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKISKV 659 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.7	598	679	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-26	612	659	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.6E-22	872	965	No hit	No description
SMART	SM00666	1.8E-21	879	961	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.6E-24	879	961	No hit	No description
PROSITE profile	PS51745	16.06	879	961	IPR000270	PB1 domain
CDD	cd06407	2.56E-33	880	960	No hit	No description
Pfam	PF00564	8.2E-14	880	960	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence Send to blast
MESPPFIPVA SCPPLXSPSS HVGNRRREAA RRRLDSPRPG AHGPRSRHRR LHLALRSQRL 60 RLHSSLLFPS LLLLLPSPWP PSAFLPPSPS PIWIVEDRAA EISSFLEDCP RFLNANEGAR 120 CGNVNASNSK ARRLPLPAVE ENADDSRVIK ERMTQALRHF KESTDQHVLV QVWAPMKKGD 180 RCFLTTSGQP FVLDPQSTRL LQYRTVSVMY IFSVDEDGEG SLGLPGRVYR HRLPEWTPNV 240 QYYSSKEYPR LAHALNYNVQ GSLALPVFEP SGQSCVGVVE LVMTLPKINY AREVDKVCKA 300 LQAVNLKSSE ILDHPNIQIS NEGRQEALAE ILEVLTVVCE AQKLPLAQTW VPCKRRTILA 360 HGGGLKKICS SFDGSCMGQV CMSTTDVAFY VIDAHMWGFR EACVEHHLQI GQGVAGRAFA 420 LRKPCFAEDV TKFSKSEYPL VHYARMFGLV GCLAICLQST HSGDDDYILE FFLPHDCKYL 480 IEQQALLDSI SALMKQCFRS LKVVSDLELQ KGISFEIINM FANENHGFEP KHICNQICDS 540 HLYASPETYT LEGYDDSQNE GNVTSDSRVQ HFPTHANAEK ASNIHFDSAG SLLSNRNNGA 600 PEKRRGKAEK SISLEVLQQY FSGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKISKVN 660 RSLSKLKRVI ESVQVAEGAF HLTSLGCPLP VAVGSISWPV NLDGSKEITG AVKDNVSSPH 720 KTPGKNDQHD KLLAQQELGH DDSSPMPEPG KDSPCSKTNG SSEGSMDTPA SLGSFHESPV 780 NETFLDDASP PSDLKQGIVG DSLEFTLQHA GGPRLPPVCL MPGVNVAKPQ PQLAGMLIED 840 SGSSKDLKNL CSNARDGCQD EHVMAANPLN PMAMPETRMV TIKASHQEDI IRFRLACTAG 900 IVALRDEVTK RLKLEVGTFD IKYLDDDHEW VMLACNADLE ECIEISGLSG SHVIRLAVHD 960 VTTHLGSSCA SLGD

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence Send to blast

MESPPFIPVA SCPPLXSPSS HVGNRRREAA RRRLDSPRPG AHGPRSRHRR LHLALRSQRL  60
RLHSSLLFPS LLLLLPSPWP PSAFLPPSPS PIWIVEDRAA EISSFLEDCP RFLNANEGAR  120
CGNVNASNSK ARRLPLPAVE ENADDSRVIK ERMTQALRHF KESTDQHVLV QVWAPMKKGD  180
RCFLTTSGQP FVLDPQSTRL LQYRTVSVMY IFSVDEDGEG SLGLPGRVYR HRLPEWTPNV  240
QYYSSKEYPR LAHALNYNVQ GSLALPVFEP SGQSCVGVVE LVMTLPKINY AREVDKVCKA  300
LQAVNLKSSE ILDHPNIQIS NEGRQEALAE ILEVLTVVCE AQKLPLAQTW VPCKRRTILA  360
HGGGLKKICS SFDGSCMGQV CMSTTDVAFY VIDAHMWGFR EACVEHHLQI GQGVAGRAFA  420
LRKPCFAEDV TKFSKSEYPL VHYARMFGLV GCLAICLQST HSGDDDYILE FFLPHDCKYL  480
IEQQALLDSI SALMKQCFRS LKVVSDLELQ KGISFEIINM FANENHGFEP KHICNQICDS  540
HLYASPETYT LEGYDDSQNE GNVTSDSRVQ HFPTHANAEK ASNIHFDSAG SLLSNRNNGA  600
PEKRRGKAEK SISLEVLQQY FSGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKISKVN  660
RSLSKLKRVI ESVQVAEGAF HLTSLGCPLP VAVGSISWPV NLDGSKEITG AVKDNVSSPH  720
KTPGKNDQHD KLLAQQELGH DDSSPMPEPG KDSPCSKTNG SSEGSMDTPA SLGSFHESPV  780
NETFLDDASP PSDLKQGIVG DSLEFTLQHA GGPRLPPVCL MPGVNVAKPQ PQLAGMLIED  840
SGSSKDLKNL CSNARDGCQD EHVMAANPLN PMAMPETRMV TIKASHQEDI IRFRLACTAG  900
IVALRDEVTK RLKLEVGTFD IKYLDDDHEW VMLACNADLE ECIEISGLSG SHVIRLAVHD  960
VTTHLGSSCA SLGD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912370.2	0.0	LOW QUALITY PROTEIN: protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2H3X1V9	0.0	A0A2H3X1V9_PHODC; protein NLP3-like isoform X1
STRING	XP_008777047.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7