PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010912337.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 250aa MW: 28432 Da PI: 6.8802

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010912337.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	97.6	7.8e-31	47	150	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k ltpsdv+k++rlv+pk++ae++ +g+ ++ l++ d esg+sW ++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++ ++ XP_010912337.1 47 FEKPLTPSDVGKLNRLVIPKQHAEKYfpldgdSGD--KGLLLSFDDiESGKSWWFRYSYWTSSQSYVLTKGWSRFVKEKQLDAGDVVLFERLRTG 139 99*************************965444..6779***********************************************99999 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++ +r+ XP_010912337.1 140 GDRLYIGCRRR 150 99999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-41	37	156	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.42E-30	45	150	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.92E-26	46	149	No hit	No description
Pfam	PF02362	1.1E-27	47	150	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-25	47	151	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.776	47	151	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MPINPIYYHP PQAWSWKPPM NPHHQPQHHY QVEEEEETQY EIRELMFEKP LTPSDVGKLN 60 RLVIPKQHAE KYFPLDGDSG DKGLLLSFDD IESGKSWWFR YSYWTSSQSY VLTKGWSRFV 120 KEKQLDAGDV VLFERLRTGG DRLYIGCRRR GAPQAPPVPT VTRSNAAVPW SPVYYTAAAS 180 SSYMYVSSVQ QDCLLHAGDG SAERAAPANS KRLRLFGVNL ECGPDWPEPQ PVQPEPWLTG 240 QSPKAPSSQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-46	43	150	4	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-46	43	150	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010912337.1	0.0	B3 domain-containing protein Os11g0156000
Swissprot	Q53QI0	1e-63	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A2H3YJI6	1e-135	A0A2H3YJI6_PHODC; B3 domain-containing protein Os11g0156000-like
STRING	XP_008799673.1	1e-136	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-49	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]