PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010912317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 27567.9 Da PI: 8.4259 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.9 | 5.6e-42 | 4 | 134 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppG+rF Pt+eel+++yL++k+e+++ ++e+vi+ v++y+++P +Lp +++ + ++w+fF++ ++++a+g r++r+t sgyWk tg+ XP_010912317.1 4 LPPGYRFYPTEEELLSFYLRNKLENRRQDMERVIPVVGVYSYDPVQLPpIsgEASIrDPEQWFFFCPMQEREAQGGRPTRTTPSGYWKLTGSPSY 98 79****************************99***************95344332324569********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 vls+++ +g kkt+vfy+grap+g+kt+W m+ey+ XP_010912317.1 99 VLSSQNLRIGWKKTMVFYTGRAPTGTKTKWKMNEYK 134 ***99999***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-47 | 2 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.865 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-23 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MTDLPPGYRF YPTEEELLSF YLRNKLENRR QDMERVIPVV GVYSYDPVQL PPISGEASIR 60 DPEQWFFFCP MQEREAQGGR PTRTTPSGYW KLTGSPSYVL SSQNLRIGWK KTMVFYTGRA 120 PTGTKTKWKM NEYKALEEAV ATTSSTHPKL RNEFSVCRVY IKSGTLRSFD RRPSANVAMN 180 SESRRRNPEA SSSANPQIAE RTSSHGCSSP RDDGLLPLAA DGTFDWNMLE DIDPEQFGRW 240 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 4 | 165 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-32 | 4 | 165 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 4 | 165 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010912317.1 | 0.0 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 5e-73 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2H3WZR8 | 1e-136 | A0A2H3WZR8_PHODC; NAC domain-containing protein 90-like | ||||
STRING | XP_008784235.1 | 1e-144 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-75 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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