PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912203.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 583aa    MW: 63109.5 Da    PI: 7.0095
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912203.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-16196284186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  +  L++a++e+  +l+rg+l++ +We+v+  +     +++  +s +qCk+k++nl+kryk + ++ +++   s s++p+f+++e
  XP_010912203.1 196 EWSDTAIGSLLDAYTERYVQLNRGNLRGRDWEDVATIVsdrcDKQKAGKSVEQCKNKIDNLKKRYKVECQRLSSG-GLSISHWPWFKKME 284
                     5********************************98877666699999*************************998.89999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-20194286No hitNo description
Gene3DG3DSA:3.40.1160.102.7E-68329576IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.353341577IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.4E-54342576IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.63E-97344577No hitNo description
PfamPF006961.0E-19344556IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MASCDDDFAL LGDEAQSQPP PPPQQQQAGA FAAAHRYVTK GPLHIQSRPL PPLAAISSPK  60
KGVAGGGHED PEDFGEAFGQ TDASNRPGGA PAFPEVSHHH HHHCFADDAN PFGTPQPDDD  120
DDDDPNNDPE RKSRGAATPA SHPHPHHHGP PPSSRPDPKR KDRDDVSDGE SPYCYNSAAK  180
KGRHMSSGDY RKDREEWSDT AIGSLLDAYT ERYVQLNRGN LRGRDWEDVA TIVSDRCDKQ  240
KAGKSVEQCK NKIDNLKKRY KVECQRLSSG GLSISHWPWF KKMEQIVGSS SSSSKAAGDE  300
DKSGALGGTG MVTRQMKRYP AAASGPVNLT NNSKMKSLTN PRWKRVVLKI SGAALVGAGP  360
QNVDPKVTML IAREIAMANR VGVEVAVVVG GRNFFSSDTW VAATGIDRAA TYQISMMASV  420
MNAILLQASL EKIGVETRVQ TALMMQEIAE PYIRRRAIRH LEKGRVVIFG GIGAGTGNPL  480
FSNDTAAALR AFEINANVVL KGTTADDVYD CNSRNSNNVA FEHISFRELV SRGFTAIDMT  540
AITFCEENNI PVVLFNLLEP GNISSALCGD QVGTFVDQTG RLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-603375763239Uridylate kinase
3ek5_B7e-603375763239Uridylate kinase
3ek5_C7e-603375763239Uridylate kinase
3ek5_D7e-603375763239Uridylate kinase
3ek5_E7e-603375763239Uridylate kinase
3ek5_F7e-603375763239Uridylate kinase
3ek6_A7e-603375763239Uridylate kinase
3ek6_B7e-603375763239Uridylate kinase
3ek6_C7e-603375763239Uridylate kinase
3ek6_D7e-603375763239Uridylate kinase
3ek6_E7e-603375763239Uridylate kinase
3ek6_F7e-603375763239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912202.10.0uncharacterized protein LOC105038186
RefseqXP_010912203.10.0uncharacterized protein LOC105038186
TrEMBLA0A2H3ZFP50.0A0A2H3ZFP5_PHODC; uncharacterized protein LOC103723839 isoform X1
STRINGXP_008813118.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-178Trihelix family protein