PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912181.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 706aa    MW: 78817.8 Da    PI: 6.4725
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912181.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.9e-23130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +++a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD ++F+  + +++
  XP_010912181.1 130 FCKILTASDTSTHGGFSVLRRHATEClppldMSQSTPTQELAAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFIFM--RGENG 222
                     99****************************9555555669************************************************..34888 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                      l+v+v+r
  XP_010912181.1 223 DLCVGVRR 230
                     89***998 PP
2Auxin_resp101.98e-34256334182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha+st+s F v+Y+Pr   s+F+v+v+k+++a+k+ ++vGmRfkm+fe+ed++e+r++Gt++gv d+++ +W +SkWrsL
  XP_010912181.1 256 ASHAVSTQSLFIVYYKPRI--SQFIVRVNKYLEAVKNGFTVGMRFKMRFEGEDVPEKRFTGTITGVGDISS-QWGGSKWRSL 334
                     789***************8..9**********************************************777.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-41119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-39125245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-18129230No hitNo description
PROSITE profilePS5086311.674130232IPR003340B3 DNA binding domain
PfamPF023622.7E-21130230IPR003340B3 DNA binding domain
SMARTSM010193.7E-21130232IPR003340B3 DNA binding domain
PfamPF065072.2E-31256334IPR010525Auxin response factor
PfamPF023091.0E-7569625IPR033389AUX/IAA domain
SuperFamilySSF542774.37E-14584665No hitNo description
PROSITE profilePS5174527.484589681IPR000270PB1 domain
PfamPF023096.9E-7635679IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MAFVSASPAS PSSERPEAGW GEEGLYEELW RACAGPLVEV PRGGERVFYF PQGHMEQLLS  60
STDQELDQQI PLFNLPSKIL CRVVNVQLRA EAETDEVYAQ ITLHPESDQS EPKSPDPCLP  120
EPRRPTVNSF CKILTASDTS THGGFSVLRR HATECLPPLD MSQSTPTQEL AAKDLHGFEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFIFMRGE NGDLCVGVRR LARQQNTIPS  240
SVISSQSMHL GVLATASHAV STQSLFIVYY KPRISQFIVR VNKYLEAVKN GFTVGMRFKM  300
RFEGEDVPEK RFTGTITGVG DISSQWGGSK WRSLNVQWDE ATNIQRPERV SPWDIEPFTG  360
PMTALNVTQQ VLTRNKRSRS PLDLSSLEAS LGFWCTGKTQ SQEVGTLNAA DAQTSEMQVF  420
WPHRPKEGND SNFMNSHSQC NKSLADYWLK DLHSPLKSPS SLMTDVSLKL FEDVKGETHA  480
IHPSWPYIST CMNEEPSLRL GNNTEKWKKS ESSNSYRLFG IDLVNPSSSI EKATVGHISL  540
SSATVEDPLQ ATASLEDSGQ HSGKAPKEQK QESQVSPKEI QIKQNCSTRS RTKVHMQGIA  600
VGRAVDLTNL ESYDDLILEL EEMFEIKGEL HLRNKWEVVY TDDEGDMMLV GDDPWPEFCK  660
MAKKIYIYTS EEVRKMRPRS KFAAAPASAG EGGGGATSCS SESAHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-172123587355Auxin response factor 1
4ldw_A1e-172123587355Auxin response factor 1
4ldw_B1e-172123587355Auxin response factor 1
4ldx_A1e-172123587355Auxin response factor 1
4ldx_B1e-172123587355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912181.10.0auxin response factor 11 isoform X1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2H3Z2260.0A0A2H3Z226_PHODC; Auxin response factor
STRINGXP_008807235.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]