PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912174.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 738aa    MW: 82429 Da    PI: 6.5942
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912174.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.3e-20130262198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....................................---..--SEEEEEETTS-EEEEEE..EEETTE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....................................ggkkeesktltledesgrsWevkliyrkksgr 58 
                     f+k+lt sd++++g +++ +++a+e+                                     +++++ +++l  +d++g +W++k+i+r++++r
  XP_010912174.1 130 FCKILTASDTSTHGGFSVLRRHATEClpplvssifsfpsflssvfsvqmlshlfrvifsfgqdMSQSTPTQELAAKDLHGFEWRFKHIFRGQPRR 224
                     8999*******************999**99999999999999999999999999999999998444455669*********************** PP

                     EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  59 yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++lt+GW+ Fv +++L +gD ++F+  + +++ l+v+v+r
  XP_010912174.1 225 HLLTTGWSTFVTSKRLVAGDAFIFM--RGENGDLCVGVRR 262
                     *************************..3488889***998 PP
2Auxin_resp101.98.5e-34288366182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha+st+s F v+Y+Pr   s+F+v+v+k+++a+k+ ++vGmRfkm+fe+ed++e+r++Gt++gv d+++ +W +SkWrsL
  XP_010912174.1 288 ASHAVSTQSLFIVYYKPRI--SQFIVRVNKYLEAVKNGFTVGMRFKMRFEGEDVPEKRFTGTITGVGDISS-QWGGSKWRSL 366
                     789***************8..9**********************************************777.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.67E-10119162IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-35125160IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-14129262No hitNo description
PfamPF023621.3E-18130262IPR003340B3 DNA binding domain
SMARTSM010194.2E-17130264IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-24184291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-35193277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8201264IPR003340B3 DNA binding domain
PfamPF065072.4E-31288366IPR010525Auxin response factor
PfamPF023091.1E-7601657IPR033389AUX/IAA domain
SuperFamilySSF542774.66E-14616697No hitNo description
PROSITE profilePS5174527.484621713IPR000270PB1 domain
PfamPF023097.3E-7667711IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAFVSASPAS PSSERPEAGW GEEGLYEELW RACAGPLVEV PRGGERVFYF PQGHMEQLLS  60
STDQELDQQI PLFNLPSKIL CRVVNVQLRA EAETDEVYAQ ITLHPESDQS EPKSPDPCLP  120
EPRRPTVNSF CKILTASDTS THGGFSVLRR HATECLPPLV SSIFSFPSFL SSVFSVQMLS  180
HLFRVIFSFG QDMSQSTPTQ ELAAKDLHGF EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL  240
VAGDAFIFMR GENGDLCVGV RRLARQQNTI PSSVISSQSM HLGVLATASH AVSTQSLFIV  300
YYKPRISQFI VRVNKYLEAV KNGFTVGMRF KMRFEGEDVP EKRFTGTITG VGDISSQWGG  360
SKWRSLNVQW DEATNIQRPE RVSPWDIEPF TGPMTALNVT QQVLTRNKRS RSPLDLSSLE  420
ASLGFWCTGK TQSQEVGTLN AADAQTSEMQ VFWPHRPKEG NDSNFMNSHS QCNKSLADYW  480
LKDLHSPLKS PSSLMTDVSL KLFEDVKGET HAIHPSWPYI STCMNEEPSL RLGNNTEKWK  540
KSESSNSYRL FGIDLVNPSS SIEKATVGHI SLSSATVEDP LQATASLEDS GQHSGKAPKE  600
QKQESQVSPK EIQIKQNCST RSRTKVHMQG IAVGRAVDLT NLESYDDLIL ELEEMFEIKG  660
ELHLRNKWEV VYTDDEGDMM LVGDDPWPEF CKMAKKIYIY TSEEVRKMRP RSKFAAAPAS  720
AGEGGGGATS CSSESAHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165123907355Auxin response factor 1
4ldw_A1e-165123907355Auxin response factor 1
4ldw_B1e-165123907355Auxin response factor 1
4ldx_A1e-165123907355Auxin response factor 1
4ldx_B1e-165123907355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912181.10.0auxin response factor 11 isoform X1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2H3Z2260.0A0A2H3Z226_PHODC; Auxin response factor
STRINGXP_008807235.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]