PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010912055.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 576aa    MW: 62211.4 Da    PI: 6.7724
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010912055.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.55.9e-24112213199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a+++         ++ +  t++++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF   +++
  XP_010912055.1 112 FAKILTPSDANNGGGFSVPRFCADSIfpgldfkADPPVQ--TISVRDVHGARWDFRHIYRGTPRRHLLTTGWSKFVNCKKLVAGDSVVFI--KNQ 202
                     89*********************999*****95444444..9************************************************..679 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                      +el+v+v+r+
  XP_010912055.1 203 AGELFVGVRRT 213
                     999*****996 PP
2Auxin_resp88.71.1e-29261344183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ a+++++Fev+Y+Pr+++++Fvv ve ve+a++v +++GmR+km+++tedss+ ++ +Gtv++    d   Wp+S+Wr+L+
  XP_010912055.1 261 AVRLAEMGCPFEVLYYPRSGSPDFVVAVEVVESAMRVYWTAGMRVKMSVDTEDSSRMTWfQGTVSAAAVKDVGPWPGSPWRMLQ 344
                     6778999**************************************************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-28107218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-20111212No hitNo description
Gene3DG3DSA:2.40.330.107.2E-33111215IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.774112214IPR003340B3 DNA binding domain
PfamPF023626.5E-22112213IPR003340B3 DNA binding domain
SMARTSM010191.1E-18112214IPR003340B3 DNA binding domain
PfamPF065077.1E-27261344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MALAAAAKEL RLVDPHVWKA CAGPAAKIPS IGSRVYYFPQ GHAEQSSSTP DFSAASCRRP  60
FILCSVSAVR LLANPDTDEV FAQIDLDPRC LSPPAPPPPA DILDGGGGVV SFAKILTPSD  120
ANNGGGFSVP RFCADSIFPG LDFKADPPVQ TISVRDVHGA RWDFRHIYRG TPRRHLLTTG  180
WSKFVNCKKL VAGDSVVFIK NQAGELFVGV RRTGRSCGSL DYLPYSPSAG GGVKLEENLG  240
SGEGFSRNVR GRVPASSVVD AVRLAEMGCP FEVLYYPRSG SPDFVVAVEV VESAMRVYWT  300
AGMRVKMSVD TEDSSRMTWF QGTVSAAAVK DVGPWPGSPW RMLQVTWDEP EVLQNVRSVN  360
PWQVELVSAP PQLCTPYPVM KKLRGPQSPD FSDVGEGSML FPVTDFKSTS MGNLSPSINY  420
NTFPAGMQGA RHDPFYVPTL FNFIPXSGQK MLSDNLHGTK MQQKLNNVST NLSVGSTLVS  480
DGSSPLSNGS ILDCGTDLLK TVASNPTTKT SGETFQLFGK IIQIEQPADV APDKEYGETT  540
GGVLPHDFSL SYQRKQLLDG LDVQHQRVSA LEACSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-701236550388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912055.10.0LOW QUALITY PROTEIN: auxin response factor 17-like
TrEMBLA0A2H3XMM00.0A0A2H3XMM0_PHODC; Auxin response factor
STRINGXP_008785886.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2255223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-158auxin response factor 17