PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 435aa    MW: 47651.6 Da    PI: 8.5952
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911659.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24125226199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++
  XP_010911659.1 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTE 215
                     89****************************996555555..8999*********************************************..458 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_010911659.1 216 NGDLCVGIRRA 226
                     8999****997 PP

2Auxin_resp118.84.3e-39295378183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fev+Y+Prast+eF+vk++ v+ a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_010911659.1 295 AANLAANGKPFEVTYYPRASTPEFCVKAAAVRVAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 378
                     7899******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-38117229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-29121231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-21124225No hitNo description
PROSITE profilePS5086313.084125227IPR003340B3 DNA binding domain
SMARTSM010192.3E-21125227IPR003340B3 DNA binding domain
PfamPF023623.1E-22125226IPR003340B3 DNA binding domain
PfamPF065074.5E-34295378IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MITFSSEPVK ESMKDTDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHA EHAQGIVDFG  60
SSSGVLALIL CRVTAVKFMA DPETDEVFAK IRMTPVRSDE PDYGDDDGMG LGSNGADVQE  120
KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGEVWKFRHI  180
YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRTENGDLC VGIRRAKRGV GVGHESPGWN  240
PPTGNCFPAY GGFSVFLREE ENKLMRSNGN GGILNSGGTS MRGRGRVRAD SVIEAANLAA  300
NGKPFEVTYY PRASTPEFCV KAAAVRVAMR IQWCPGMRFK MAFETEDSSR ISWFMGTISS  360
VQVADPIRWP NSPWRLLQQI LLACFIQQNK IFVGMHPAAA GASCAGMLFF GKKKPYVLGA  420
NIVLFPLPLP CSFYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-732037851367Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911659.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2H3Y0C20.0A0A2H3Y0C2_PHODC; Auxin response factor
STRINGXP_008791554.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-177auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]