PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010911659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 435aa MW: 47651.6 Da PI: 8.5952 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.6e-24 | 125 | 226 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ XP_010911659.1 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTE 215 89****************************996555555..8999*********************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_010911659.1 216 NGDLCVGIRRA 226 8999****997 PP | |||||||
2 | Auxin_resp | 118.8 | 4.3e-39 | 295 | 378 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eF+vk++ v+ a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_010911659.1 295 AANLAANGKPFEVTYYPRASTPEFCVKAAAVRVAMRIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 378 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-38 | 117 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.23E-29 | 121 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.03E-21 | 124 | 225 | No hit | No description |
PROSITE profile | PS50863 | 13.084 | 125 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 125 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-22 | 125 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.5E-34 | 295 | 378 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MITFSSEPVK ESMKDTDKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHA EHAQGIVDFG 60 SSSGVLALIL CRVTAVKFMA DPETDEVFAK IRMTPVRSDE PDYGDDDGMG LGSNGADVQE 120 KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDV HGEVWKFRHI 180 YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRTENGDLC VGIRRAKRGV GVGHESPGWN 240 PPTGNCFPAY GGFSVFLREE ENKLMRSNGN GGILNSGGTS MRGRGRVRAD SVIEAANLAA 300 NGKPFEVTYY PRASTPEFCV KAAAVRVAMR IQWCPGMRFK MAFETEDSSR ISWFMGTISS 360 VQVADPIRWP NSPWRLLQQI LLACFIQQNK IFVGMHPAAA GASCAGMLFF GKKKPYVLGA 420 NIVLFPLPLP CSFYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-73 | 20 | 378 | 51 | 367 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911659.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2H3Y0C2 | 0.0 | A0A2H3Y0C2_PHODC; Auxin response factor | ||||
STRING | XP_008791554.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-177 | auxin response factor 16 |
Publications ? help Back to Top | |||
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