PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010911440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 21336 Da PI: 8.5014 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123 | 1.5e-38 | 31 | 132 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C +ap+f eq +++fa+vhk+FGasnv+kll+++p +r da+ +++yeA+ar+ dPvyG+v++il+lqqq++ l+ae+ XP_010911440.1 31 PCGACKFLRRKCVSGCLFAPHFGTEQgAARFAAVHKVFGASNVSKLLAHVPAGRRGDAVLTICYEAQARLADPVYGCVSTILSLQQQVAALQAEI 125 7*********************999989******************************************************************* PP DUF260 95 allkeel 101 + ++++l XP_010911440.1 126 SIVRSQL 132 *999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.517 | 30 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-38 | 31 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MDSKGGGGGG GGGGPRGDAG KRAASAGQSA PCGACKFLRR KCVSGCLFAP HFGTEQGAAR 60 FAAVHKVFGA SNVSKLLAHV PAGRRGDAVL TICYEAQARL ADPVYGCVST ILSLQQQVAA 120 LQAEISIVRS QLINTRLAVA GALHQGSQQV QHIAVLQPAY SSNSWTCHNM VDLSSFASGL 180 DLGDTKPTSR GFEPLQRSQP SNDEEE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-37 | 25 | 133 | 5 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-37 | 25 | 133 | 5 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911440.1 | 1e-150 | LOB domain-containing protein 20, partial | ||||
Swissprot | Q9SRV3 | 5e-64 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A2H3X1V6 | 1e-117 | A0A2H3X1V6_PHODC; LOB domain-containing protein 20 | ||||
STRING | XP_008777051.1 | 1e-118 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-57 | LOB domain-containing protein 20 |