PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911363.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 357aa    MW: 40051.7 Da    PI: 4.629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911363.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l  +++++G g+W++ +++ g+ R++k+c++rw +yl
   XP_010911363.1 16 KGSWTPEEDMRLMAYIQKYGHGNWRALPKRAGLLRCGKSCRLRWMNYL 63
                     799*****************************99************97 PP
2Myb_DNA-binding50.64.4e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
   XP_010911363.1  69 RGNFSKEEEESIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24766IPR009057Homeodomain-like
PROSITE profilePS5129416.1681163IPR017930Myb domain
SuperFamilySSF466895.87E-3113110IPR009057Homeodomain-like
SMARTSM007178.3E-141565IPR001005SANT/Myb domain
PfamPF002493.0E-161663IPR001005SANT/Myb domain
CDDcd001678.98E-111863No hitNo description
PROSITE profilePS5129423.9864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2667118IPR009057Homeodomain-like
SMARTSM007173.8E-1468116IPR001005SANT/Myb domain
PfamPF002492.5E-1469114IPR001005SANT/Myb domain
CDDcd001674.79E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRGRAPCCE KVGLNKGSWT PEEDMRLMAY IQKYGHGNWR ALPKRAGLLR CGKSCRLRWM  60
NYLRPDIKRG NFSKEEEESI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLLS  120
KDRSQKTDNL EEMPSLSSSS TTSHSCSDQV EGKSDSEHNN PSVDSMNPSE DKIEIPIEPS  180
MDMWVMLEDA LPSSPRKTDT EDKNILETQL EQNSFSDSLA TNVSSSRGGQ GQALNDIYPR  240
EAEKDPLEVP DVPIEPEIWD MIQDGDAGLF SPQVGAMEEL GFHGNPQSLD EDPSRGEGSR  300
IWVEYLEKEL GLWGASDDNQ ECLMGPWAEM EGDPVSRYFQ KGPSSPSPLD LHDLKVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911363.10.0myb-related protein Zm1
TrEMBLA0A2H3YL230.0A0A2H3YL23_PHODC; myb-related protein Zm1-like
STRINGXP_008800091.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.17e-68myb domain protein 63