PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010911331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 42162.6 Da PI: 8.5651 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 78 | 101 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f+r G+C G+rC+F Hgp XP_010911331.1 78 RVPCYYFQR-GHCLKGERCPFTHGP 101 89*******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.108 | 1 | 11 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.817 | 13 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2 | 15 | 38 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 75 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 76 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 80 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
GNECEYRHCD GARANPRDCW YWLNGNCLNL KCLFRHAPLD GLFGTQGPSS GPVQPPSRAV 60 ATTKIPAGHA PSTMNKERVP CYYFQRGHCL KGERCPFTHG PQASGNPVSQ QVAKVTTIIP 120 EPALQHFQGN QRQIPQGSSR STRLQGRITL PGRSLPDIPN DLPSENHGNR GRPRGRPSPL 180 RPRNYQGRHH ERVRQRSNEE FAADARSSGR KRTRRDDTSP PDFAGPKSLA ELKGAKVMEN 240 SQDLSTKSIS AATPLQLNNM KTAKGAELRY PKDSLSFEGP KSLSVILKRK REVASANDAS 300 SGDENDRRDG ENAADGSVLV ALSDVHQSIL PVETKKDGHD DASSLEENKD RTTKEKEEGG 360 LNHGEEGSIY DGRSSAEEDM FDAD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911331.3 | 0.0 | zinc finger CCCH domain-containing protein 32, partial | ||||
TrEMBL | A0A2H3ZFI4 | 1e-107 | A0A2H3ZFI4_PHODC; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | XP_008813038.1 | 1e-107 | (Phoenix dactylifera) |