PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911271.1
Common NameGLO1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24307.8 Da    PI: 9.0643
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911271.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.1e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtfskRrngi+KKA E+SvLCda+v+v+ifss+gk+ ey+s
  XP_010911271.1  9 KRIENSTNRQVTFSKRRNGIIKKAREISVLCDAQVSVVIFSSSGKMSEYCS 59
                    79***********************************************96 PP
2K-box81.32.2e-2771167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq++sgk+l++ak+esl+ e++++kke++n+q e+Rhl+GedL+sLs keL  +e++L+++l ++R+k++e+l++  ++ +  e+e+++ +  L+
  XP_010911271.1  71 YQHNSGKKLWDAKHESLSAEIDRIKKENDNMQIELRHLKGEDLNSLSPKELIPIEDALQNGLISVRDKQMEFLKKLKKNERLLEEENKHLTYLLH 165
                     8999*********************************************************************9988888888888888887777 PP

           K-box  96 kk 97 
                     ++
  XP_010911271.1 166 QQ 167
                     76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.38161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-37296IPR002100Transcription factor, MADS-box
CDDcd002652.87E-43280No hitNo description
PRINTSPR004042.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014866.7E-1982161IPR002487Transcription factor, K-box
PROSITE profilePS5129715.13184170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISVLCD AQVSVVIFSS SGKMSEYCSP  60
STTLSRILER YQHNSGKKLW DAKHESLSAE IDRIKKENDN MQIELRHLKG EDLNSLSPKE  120
LIPIEDALQN GLISVRDKQM EFLKKLKKNE RLLEEENKHL TYLLHQQELA MDANVRELEL  180
GYPSKDRDFA SHMPLAFHVQ PIQPNLQENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18175173MEF2 CHIMERA
6byy_B2e-18175173MEF2 CHIMERA
6byy_C2e-18175173MEF2 CHIMERA
6byy_D2e-18175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911271.11e-154MADS-box transcription factor 2 isoform X2
SwissprotQ407021e-109MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLQ71TT01e-153Q71TT0_ELAGV; MADS box transcription factor
STRINGXP_008783315.11e-142(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Adam H, et al.
    MADS box genes in oil palm (Elaeis guineensis): patterns in the evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA subfamilies.
    J. Mol. Evol., 2006. 62(1): p. 15-31
    [PMID:16320117]