PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010911265.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28491.8 Da    PI: 8.1379
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010911265.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.5e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtfskRrngi+KKA E+SvLCda+v+v+ifss+gk+ ey+s
  XP_010911265.1  9 KRIENSTNRQVTFSKRRNGIIKKAREISVLCDAQVSVVIFSSSGKMSEYCS 59
                    79***********************************************96 PP
2K-box24.41.2e-0971106136
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqR 36 
                     yq++sgk+l++ak+esl+ e++++kke++n+q e+R
  XP_010911265.1  71 YQHNSGKKLWDAKHESLSAEIDRIKKENDNMQIELR 106
                     8999*****************************998 PP
3K-box47.29.2e-171402013697
           K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     Rhl+GedL+sLs keL  +e++L+++l ++R+k++e+l++  ++ +  e+e+++ +  L+++
  XP_010911265.1 140 RHLKGEDLNSLSPKELIPIEDALQNGLISVRDKQMEFLKKLKKNERLLEEENKHLTYLLHQQ 201
                     9*************************************998888888888888888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.38161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-41160IPR002100Transcription factor, MADS-box
CDDcd002659.74E-44280No hitNo description
SuperFamilySSF554552.75E-37296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.48984204IPR002487Transcription factor, K-box
PfamPF014861.5E-12140195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISVLCD AQVSVVIFSS SGKMSEYCSP  60
STTLSRILER YQHNSGKKLW DAKHESLSAE IDRIKKENDN MQIELRFILE CCFFIYCTSF  120
CWPILIYWVF HGDFFTVIAR HLKGEDLNSL SPKELIPIED ALQNGLISVR DKQMEFLKKL  180
KKNERLLEEE NKHLTYLLHQ QELAMDANVR ELELGYPSKD RDFASHMPLA FHVQPIQPNL  240
QENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17175173MEF2 CHIMERA
6byy_B3e-17175173MEF2 CHIMERA
6byy_C3e-17175173MEF2 CHIMERA
6byy_D3e-17175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911265.10.0MADS-box transcription factor 2 isoform X1
SwissprotQ407021e-100MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLQ71TT01e-144Q71TT0_ELAGV; MADS box transcription factor
STRINGXP_008805865.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]