PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010911001.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 311aa MW: 33485.8 Da PI: 7.6126

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010911001.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.7	2.8e-13	69	113	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar + Rt+ q+ s+ qky XP_010911001.1 69 PWTEEEHRMFLLGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 113 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	26	No hit	No description
PROSITE profile	PS51294	19.823	62	118	IPR017930	Myb domain
SuperFamily	SSF46689	6.46E-17	64	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-19	65	117	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.1E-12	66	112	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-11	66	116	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-9	69	114	No hit	No description
Pfam	PF00249	7.1E-11	69	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MKKSASMGSL YSAGASSIGG GGGGGCSPNP GSPSNDPLRD HQAAAGYASD NAAQASCSNC 60 RNERKKGVPW TEEEHRMFLL GLQKLGKGDW RGIARNFVVS RTPTQVASHA QKYFIRQTNA 120 SRRKRRSSLF DMVPEMPTDQ LPVLEERFMH QSPPNEPDNT NPRPALNLCQ NQEPELAEPL 180 TKNNPPPELN ETMPYGDTLM PAVPAFYPAF IPVPYAFWPP DLTAPAKQVM GEMHEIVKPT 240 PVVPKEPVNL DDVAGMSKLS IGEHVAGRME PSALSLKLLG ASGSRQSAFH LNPSVSGPDL 300 SPSSSNAIHA V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010911001.2	0.0	transcription factor MYBS3
Swissprot	Q7XC57	5e-73	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	H6TNP9	0.0	H6TNP9_ELAGV; Putative MYB transcription factor-like protein (Fragment)
STRING	XP_008791498.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1939	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-51	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]