PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010910911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 20403.5 Da PI: 8.3024 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_010910911.1 58 YECKTCNRRFPTFQALGGHRTSH 80 99**********99998888877 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H XP_010910911.1 103 HECPVCGLEFPIGQALGGHMRRH 125 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.3E-9 | 56 | 125 | No hit | No description |
Pfam | PF13912 | 2.8E-12 | 58 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.096 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-10 | 102 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.663 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MHTCRLLDQE FMAKFSTAGR EEGEMESPNM ANLLLLLSCS GAKAQKINGI KKPVGRMYEC 60 KTCNRRFPTF QALGGHRTSH MRPRGRRNPV EQTKKEISKP RTHECPVCGL EFPIGQALGG 120 HMRRHKPVEA GEIHAEEEKA GEGKLDLNLT PLENDLELTT LRLGLELVKE ASIIDFFSCS 180 GST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910911.3 | 1e-132 | zinc finger protein ZAT8, partial | ||||
TrEMBL | A0A2H3YAC2 | 9e-83 | A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like | ||||
STRING | XP_008795823.1 | 2e-83 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-31 | C2H2 family protein |