PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910907.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 441aa    MW: 48125.7 Da    PI: 6.6101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910907.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_010910907.1 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding50.83.8e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++
   XP_010910907.1  67 RGTFSQEEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNFWNS 110
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-28664IPR009057Homeodomain-like
PROSITE profilePS5129419.219961IPR017930Myb domain
SuperFamilySSF466898.61E-3012108IPR009057Homeodomain-like
SMARTSM007172.2E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-151461IPR001005SANT/Myb domain
CDDcd001672.79E-121761No hitNo description
PROSITE profilePS5129426.48662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2665116IPR009057Homeodomain-like
SMARTSM007171.7E-1566114IPR001005SANT/Myb domain
PfamPF002496.7E-1567110IPR001005SANT/Myb domain
CDDcd001672.20E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNFWNS CIKKKLRQRG  120
IDPTTHKPLA DTQARDDKLP PNGGQNINSG ADDLSGLPSP AALDPSIPKP ARSLMLTVDK  180
FAPESSNPKN SAVGAQEFLL DRFVASQEST SSCHPSNSLG FFPLPQLSYA SDCGGNQTAS  240
VGLSVTPNPL LWFNQSSRLF DSSPEFSCST ISTLVPSASA STLSTWMGLK SVIGLPPDNP  300
PPSCAGLTGI SNYWEAANCS NSSGSSGGNT SSGIELQSNS SYFESGIFPW PDLTPDKDAP  360
VQLQGEPEDL KWSEYLHGAF PVSAAIQNQS QPLYGDIKTE SRVAVDGFGT CYPNRQAQQQ  420
QQASDMYGKD FQRVSVAFEQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910907.10.0transcription factor MYB61
TrEMBLA0A2H3YLB30.0A0A2H3YLB3_PHODC; transcription factor MYB61
STRINGXP_008775656.11e-172(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-97myb domain protein 61