PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010910776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 162aa MW: 18776.4 Da PI: 10.1283 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 9.9e-08 | 112 | 144 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+++++++L +++gL+ +q+ +WF N+R + XP_010910776.1 112 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 144 58*****************************87 PP | |||||||
2 | ELK | 29.8 | 1.3e-10 | 65 | 86 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qL++++++++g++++E++ XP_010910776.1 65 ELKIQLKQGFKSRIGDVREEIL 86 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 4.4E-7 | 65 | 86 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.289 | 65 | 85 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0022 | 65 | 86 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.386 | 85 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-10 | 87 | 152 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-16 | 87 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.39E-11 | 88 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-25 | 92 | 151 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-18 | 105 | 144 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MHMIWRTLSG LTLEEGTGAT MSDDEDELQL DGPLGMTVDG HDMMGFGPLL PTESERSLME 60 RVRQELKIQL KQGFKSRIGD VREEILRKRR AGKLPGDTTS VLKQWWLSHS KWPYPTEDDK 120 AKLVEETGLQ LKQINNWFIN QRKRNWHSNS QSATTLKSKR KR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-13 | 88 | 144 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 141 | 161 | RKRNWHSNSQSATTLKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910776.1 | 1e-116 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q94LW3 | 2e-91 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2H3Z216 | 1e-96 | A0A2H3Z216_PHODC; homeobox protein knotted-1-like 3 | ||||
STRING | XP_008807225.1 | 2e-97 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62990.1 | 5e-88 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |