PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010910608.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

BES1

Protein Properties

Length: 595aa MW: 67189.7 Da PI: 5.0607

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010910608.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	89.9	6.2e-28	1	126	29	134
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr..........kgskpl....eeaeaagssasaspesslq.sslkssalaspve 108 +++GLR++Gn+ lp+raD+n+Vl+AL+reAGw+ve+DGttyr + p+ + + + +s+es+l+ +slk+s++++ ++ XP_010910608.1 1 MLTGLRQYGNFLLPARADMNDVLAALAREAGWIVEADGTTYRpssvtapltvA--APPppppPPHTQLAPFPVRSIESPLSaNSLKNSSMKASLD 93 79**************************************77666665431..222345556677788899****99******** PP DUF822 109 sysaspksssfpspssldsislasa.......a 134 s+++ ++ ++++sp+slds+ +a+ a XP_010910608.1 94 SQASLLRIDESLSPASLDSVVVAERdtrgekyA 126 ******************9998754443333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.7E-30	1	132	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.46E-165	153	589	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	7.4E-178	156	589	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.1E-82	162	569	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	193	207	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	214	232	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	236	257	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	329	351	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	402	421	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	436	452	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	453	464	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	471	494	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.1E-56	509	531	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MLTGLRQYGN FLLPARADMN DVLAALAREA GWIVEADGTT YRPSSVTAPL TVAAPPPPPP 60 PPHTQLAPFP VRSIESPLSA NSLKNSSMKA SLDSQASLLR IDESLSPASL DSVVVAERDT 120 RGEKYANASP INSPECVEAD QLMRESAEGE GDFAGTPYIP VYVMLPTSIV NSYCQLVDVE 180 ATRQELRHLK SLNVDGVVVD CWWGIVEGWS PHKYEWSGYR DLFNIIREFE LKLQVVMAFH 240 ECGGNASGEI PISLPKWVLE IGKDNQDIFF TDREGRRNTE CLSWGIDKER VLKGRTGIEV 300 CFDFMRSFRM EFNDLFEEGF ITAVEIGLGA SGELKYPSHP ERIGWRYPGI GEFQCYDKYM 360 QQNLRRAAKL RGHSFWARGP DNAGHYNSRP HETGFFCDRG DYDGYYGRFF LHWYAQTLID 420 HADQVLSLAN LAFEGTQVII KIPAVYWWYK TSSHAAELTA GFYNPTNQDG YSPIFDMLKK 480 HSAAMKFVCY GPQHSAQESD EALADLEGLS WQVMNSAWDR SLAVAAHGTL PCHDRETFIR 540 IIENAKPRND PDRRHLSFFT YQQLTSVFME REMCFSELDN FIKCMHGEVV NDVQA

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MLTGLRQYGN FLLPARADMN DVLAALAREA GWIVEADGTT YRPSSVTAPL TVAAPPPPPP  60
PPHTQLAPFP VRSIESPLSA NSLKNSSMKA SLDSQASLLR IDESLSPASL DSVVVAERDT  120
RGEKYANASP INSPECVEAD QLMRESAEGE GDFAGTPYIP VYVMLPTSIV NSYCQLVDVE  180
ATRQELRHLK SLNVDGVVVD CWWGIVEGWS PHKYEWSGYR DLFNIIREFE LKLQVVMAFH  240
ECGGNASGEI PISLPKWVLE IGKDNQDIFF TDREGRRNTE CLSWGIDKER VLKGRTGIEV  300
CFDFMRSFRM EFNDLFEEGF ITAVEIGLGA SGELKYPSHP ERIGWRYPGI GEFQCYDKYM  360
QQNLRRAAKL RGHSFWARGP DNAGHYNSRP HETGFFCDRG DYDGYYGRFF LHWYAQTLID  420
HADQVLSLAN LAFEGTQVII KIPAVYWWYK TSSHAAELTA GFYNPTNQDG YSPIFDMLKK  480
HSAAMKFVCY GPQHSAQESD EALADLEGLS WQVMNSAWDR SLAVAAHGTL PCHDRETFIR  540
IIENAKPRND PDRRHLSFFT YQQLTSVFME REMCFSELDN FIKCMHGEVV NDVQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-132	158	588	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010910608.2	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2H3Z5J9	0.0	A0A2H3Z5J9_PHODC; Beta-amylase
STRING	XP_008808792.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]