PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910603.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 295aa    MW: 33918.3 Da    PI: 5.6683
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910603.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-144188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd++l++ +   G ++W+++++  g+ R++k+c++rw +yl
   XP_010910603.1 41 RGPWSMEEDQKLINFIINNGVHCWRLVPKLAGLMRCGKSCRLRWTNYL 88
                     89********************************************97 PP
2Myb_DNA-binding51.62.1e-1694137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E+ ++++++  lG++ W++Ia++++ gRt++++k++w++
   XP_010910603.1  94 RGALSEDEENQIIQLHSHLGNR-WSKIASYFP-GRTDNEIKNHWNT 137
                      7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-213291IPR009057Homeodomain-like
PROSITE profilePS5129415.0573688IPR017930Myb domain
SuperFamilySSF466895.72E-2838135IPR009057Homeodomain-like
SMARTSM007177.8E-104090IPR001005SANT/Myb domain
PfamPF002494.6E-134188IPR001005SANT/Myb domain
CDDcd001671.15E-74388No hitNo description
PROSITE profilePS5129427.26689143IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2492144IPR009057Homeodomain-like
SMARTSM007172.4E-1593141IPR001005SANT/Myb domain
PfamPF002494.0E-1594137IPR001005SANT/Myb domain
CDDcd001677.42E-1198137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MHWLSTESLC PSCSTWYSLS LSRCVFNMGR QPCCDKIGLK RGPWSMEEDQ KLINFIINNG  60
VHCWRLVPKL AGLMRCGKSC RLRWTNYLRP DLKRGALSED EENQIIQLHS HLGNRWSKIA  120
SYFPGRTDNE IKNHWNTRIK KKLKLLGLDP VTHKPLQQPA KCDSLRSDSA SESYPSQIQE  180
KSIEIMDLVS SNQEELLVKN EEQKEVQFDS NDTEVLLHGN VVPWENLDIE EMKPRPDPSS  240
SSSASFSIDD TLYPSAQRES SLEGSNQCWF DTTDSFPSWE ALYPLEDIFP FGKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29391435108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910603.20.0myb-related protein 315
TrEMBLA0A2H3Z2061e-163A0A2H3Z206_PHODC; protein ODORANT1
STRINGXP_008807214.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5070822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.18e-80myb domain protein 40