PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010910576.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 206aa MW: 22260.1 Da PI: 6.2212

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010910576.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.8e-42	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_010910576.1 43 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTTAHRVFGASNIIKSLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLA 137 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010910576.1 138 RAQAE 142 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.86	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-42	43	140	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDSSETTTTT IHHQYSSSSS PSSSPTSSPP SLPPTPPSAV LSPCAACKIL RRRCVEKCVL 60 APYFPPTEPL KFTTAHRVFG ASNIIKSLQD LPESQRADAV SSMVYEANAR IRDPVYGCAG 120 AICQLQKQVS ELQAQLARAQ AELVNMQAQH AHLIALVCME MAQSQQQHIP SSSQPIDTLA 180 AGPYVDSFYI DAGSSQGSIW EEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	34	145	3	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	34	145	3	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010910576.1	1e-150	LOB domain-containing protein 1
Swissprot	Q9LQR0	5e-71	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2H3XUP6	1e-108	A0A2H3XUP6_PHODC; LOB domain-containing protein 1-like
STRING	XP_008789049.1	1e-109	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-57	LOB domain-containing protein 1