PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010910542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 355aa MW: 36801.4 Da PI: 5.6327 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117 | 2.4e-36 | 64 | 177 | 7 | 106 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............seceaesssssasnsssg. 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tg+++++a s +++s++ XP_010910542.1 64 RTRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGSGTIPAiattvdgtlkipS-----------EAPSAAg 147 899********************************************************888883322222222221...........2111112 PP TCP 89 ............kaaksaakskksqksaas 106 + ak +k +++++ a+s XP_010910542.1 148 sttsvgdvkregSTAKRPKKLQPTRAAANS 177 222233443322333333333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.816 | 65 | 119 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.1E-30 | 65 | 158 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence Send to blast |
MDSKKQEKGD DEDGQRTDLR MAGGGRGGGS GGAATPVHHR LIVPKPEPME FMGALSILRR 60 PAGRTRDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIRWLLQ HAEPAIIAAT 120 GSGTIPAIAT TVDGTLKIPS EAPSAAGSTT SVGDVKREGS TAKRPKKLQP TRAAANSSSG 180 VSAAHYPIVA DPLVHSGGAI SISSGLAPIA AAGPAAPPGL VPMCAVGNTV WGRVIPPGAL 240 WMLPPSSAVA AGPSNQQPQI WTFPSPPHII NLVGARAIPT VFPGGVPGLN LATAAEVHPV 300 PFADGKPGDD GASASPLQLM EESADQEAAE EEQRQLPEEE EEEEEELLSE SSPED |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910542.1 | 0.0 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 7e-76 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 7e-76 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A2H3ZF64 | 0.0 | A0A2H3ZF64_PHODC; transcription factor PCF2-like | ||||
STRING | XP_008812846.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-41 | TCP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|