PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910375.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 349aa    MW: 37460.6 Da    PI: 8.5788
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910375.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.86.4e-32172228158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk  +k rkpylheSRh+hAlrR+Rg+gGrF
  XP_010910375.1 172 EEPVYVNAKQYHGILRRRQSRAKAELEKKA-IKVRKPYLHESRHQHALRRARGCGGRF 228
                     69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-36170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.01171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.2E-27173228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.8E-24174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.8E-24205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MESRAECTDA VETNGQSTLP STINPQPWWR GPGFGGLSPA VLLDGASKST SVNLPVGGST  60
NKGGQAQSHD GADGMGDVSK VRQNVSTHRE GSFGQEPQHL QPVSPAMPPM MPEYFAPHTQ  120
LELGQSLACA TYSYSDPYFA GFMAPYGTQA LVHPQMLGMP HTRMPLPLEM TEEPVYVNAK  180
QYHGILRRRQ SRAKAELEKK AIKVRKPYLH ESRHQHALRR ARGCGGRFLN TKKADGNAAT  240
ASPENGANTG ASLQRQSASS SGSEALPSDC SGNPDSGSNM NEIKRPAVQG LCEARVYNNK  300
NGGHQQQSGF QLSSFHSKSS GRVEEGDCSG QQHGGILVNQ PPNWAVTIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20171235165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910375.10.0nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010910376.10.0nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010910377.10.0nuclear transcription factor Y subunit A-7 isoform X1
TrEMBLA0A2H3XYY80.0A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRINGXP_008790783.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-49nuclear factor Y, subunit A1