PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010910363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRF | ||||||||
Protein Properties | Length: 382aa MW: 42286.1 Da PI: 9.4023 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.2 | 3.8e-25 | 140 | 183 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e XP_010910363.1 140 DPEPGRCRRTDGKKWRCSREVVTGQKYCERHVHRGRNRSRKHVE 183 79****************************************97 PP | |||||||
2 | QLQ | 49.9 | 9.6e-18 | 71 | 106 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ aQ+q+L+ Q+l+yKy+++++ vP eL+++i++ XP_010910363.1 71 YFSLAQWQELELQALIYKYMISGASVPVELILPIKR 106 7*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.3E-8 | 70 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.2E-12 | 71 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.667 | 71 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.481 | 140 | 184 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 141 | 183 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MESHQWRTQQ PSDHQHEHSA KIPKLRLADQ QQPPASALPL FAAERKTTTH TSPLFSYPNL 60 SPTGVPRVGG YFSLAQWQEL ELQALIYKYM ISGASVPVEL ILPIKRSLLN ATPYYHHLHQ 120 YQHFQQPLLQ TGYWGRCVVD PEPGRCRRTD GKKWRCSREV VTGQKYCERH VHRGRNRSRK 180 HVEIPTATAT NGLKTTLPLP SGKTTESHFS LSDSSATLDI LPLIQRPPDG KTVQGSLLES 240 YYGSYSSPEF HDDKPDGHVL RRFFDDWPRS QQEPNTNTSI NARSAASTAQ LSISVPGNLS 300 SDFSLKLSTG NGDKPGPSSN RDNGDGRVHP PLPNWSSWGN HGEASMGGPL AEALRSSTST 360 PSPTSVLQRP NGSISETSSI ST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910363.1 | 0.0 | growth-regulating factor 3 isoform X2 | ||||
TrEMBL | A0A3Q0I403 | 0.0 | A0A3Q0I403_PHODC; growth-regulating factor 3 | ||||
STRING | XP_008793976.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25461 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 3e-54 | growth-regulating factor 4 |