PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910098.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 277aa    MW: 30677 Da    PI: 10.0751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910098.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.4e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +v ++G g W+tI +         +R+  ++k++w++
   XP_010910098.1  5 KQKWTSEEEEALRAGVDKHGAGKWRTIQKDPEfshclATRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.422161IPR017930Myb domain
SuperFamilySSF466891.02E-14258IPR009057Homeodomain-like
SMARTSM007172.1E-7459IPR001005SANT/Myb domain
PfamPF002491.5E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-14556IPR009057Homeodomain-like
CDDcd116609.07E-21656No hitNo description
SMARTSM005266.6E-10112177IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.3E-13113184IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.822114182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466891.02E-14116146IPR009057Homeodomain-like
PfamPF005381.2E-9116177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRAGV DKHGAGKWRT IQKDPEFSHC LATRSNIDLK DKWRNMSVSA  60
SGHGSRDKIR TPKVKGLPAI PLSNSQTPTI SAPKKNDAAQ ATVDSTKNSQ DGKNPPRYTA  120
MIIEALMEMQ EPHGSEIGAI FSFIEQQHNV PQNFRRLLSS KLRRLVAQNK IEKVQKGYRL  180
KDSSFATKTP TPKQKDPVNR LKLPQNSGSC NAINLIEDAA ITAAYKIADA EAKSFLASEA  240
MKEAEKISKM AEETDSLLLL AKEIFERCAR GEIMTMA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910098.10.0single myb histone 4
SwissprotQ6WLH47e-94SMH3_MAIZE; Single myb histone 3
TrEMBLA0A2H3YFB20.0A0A2H3YFB2_PHODC; single myb histone 4-like
STRINGXP_008797902.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-61MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]