PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010910068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 24709.6 Da PI: 9.8917 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71 | 1.1e-22 | 15 | 61 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krie++ rqv fskRr+g++KKA+ELS+LC+ae+ vi+fs+ gk + XP_010910068.1 15 KRIESEEARQVCFSKRRAGLFKKANELSILCGAEIGVIVFSPAGKPF 61 79*****************************************9855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.787 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-29 | 7 | 81 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-35 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.23E-40 | 8 | 76 | No hit | No description |
PRINTS | PR00404 | 1.3E-20 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-27 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-20 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-20 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVRKPSMGRQ KIDIKRIESE EARQVCFSKR RAGLFKKANE LSILCGAEIG VIVFSPAGKP 60 FSFGHPSVDS IIDRFLFGSP SPTTLPSADP RMPVAREMMV VHEFNQQYTV LTALLETEKR 120 KKAVLEEAVR VKQAGEAALW GANIEELSLG ELESLHKSFE RLRRDVAMRA DQLVIEAAHT 180 RSSSVAAAGS FVPPPPLGVN LGFGRGVEGS MALPPPTFFG YGRGPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 8e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 8e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 8e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 7e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 7e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 7e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 7e-17 | 7 | 75 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010910068.1 | 1e-164 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2H3XTF6 | 1e-122 | A0A2H3XTF6_PHODC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_008788342.1 | 1e-123 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-35 | AGAMOUS-like 62 |