PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010909817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 24546.7 Da PI: 9.4671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.4e-17 | 24 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + ++++g++R++k+c++rw++yl XP_010909817.1 24 KGPWSPEEDSKLKEFIEKYGTGgNWIALSHKVGLKRCGKSCRLRWLNYL 72 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.784 | 19 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 20 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 24 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.76E-19 | 25 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.69E-11 | 26 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 76 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MYVGEVFSRK SIQLLSIVEA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LSHKVGLKRC 60 GKSCRLRWLN YLRPNIKHGE FSDDEDRIIC SLFASIGSRT IKRRRTRRYY KCLSSGMAQR 120 FDSESNFHAN GHKLLPPVVP DKLEGFHEDH KRHRRYRSME EFSSDLYSPE KYGDHRPRLA 180 KDVRQGQRFT NDDPHDYADE KNFEMDDLS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-13 | 24 | 99 | 7 | 80 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909817.1 | 1e-155 | transcription factor MYB80 | ||||
TrEMBL | A0A061GYH8 | 6e-47 | A0A061GYH8_THECC; Myb domain protein 36, putative | ||||
STRING | EOY34287 | 1e-47 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-42 | myb domain protein 36 |