PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | AP2 | ||||||||
Protein Properties | Length: 242aa MW: 27491.7 Da PI: 10.0663 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.1e-12 | 63 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k++g+++A+I+d ++ + ++k+ g + +e Aa a++ a++k+ g XP_010909753.1 63 SIYRGVTRHKWTGKYEAHIWD-KDfRHhhRNKKGKQGVYNDEEAAAHAYDLAALKYLG 119 57*******************.45444665555555999999*************987 PP | |||||||
2 | AP2 | 50 | 7.1e-16 | 162 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++ rW+A+I+d +k+ lg+f t eeAaka++ a +++g XP_010909753.1 162 SKYRGVARHHSSRRWEARIHDaHD----NKNLFLGTFETQEEAAKAYDLAVINYRG 213 89*******************652....4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-7 | 63 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-15 | 63 | 127 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-17 | 64 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-13 | 64 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 64 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 65 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 162 | 213 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-20 | 162 | 223 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-18 | 162 | 223 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.1E-23 | 163 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-19 | 163 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 163 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 203 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNSPAPLPPS SPYSSKFPCG SHALSFMASV STIHHCGPRN KTNQRPLRSN DSHLKKEKGK 60 RTSIYRGVTR HKWTGKYEAH IWDKDFRHHH RNKKGKQGVY NDEEAAAHAY DLAALKYLGS 120 GTVLNFPEIT YLNECQEMQS MSKNDYVAYI RRNSNGFTRG ASKYRGVARH HSSRRWEARI 180 HDAHDNKNLF LGTFETQEEA AKAYDLAVIN YRGSDALTNF PISNYLSEHP TSSQQLPVPK 240 SA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909752.1 | 1e-161 | ethylene-responsive transcription factor WRI1 isoform X1 | ||||
Swissprot | Q5YGP7 | 9e-65 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2I0X2Y1 | 6e-73 | A0A2I0X2Y1_9ASPA; Ethylene-responsive transcription factor WRI1 | ||||
STRING | Bra003178.1-P | 9e-71 | (Brassica rapa) | ||||
STRING | XP_010050254.1 | 3e-71 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 2e-57 | AP2 family protein |