PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010909653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 468aa MW: 53318.1 Da PI: 7.6751 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 7 | 30 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ +C+FaHg XP_010909653.1 7 YKTKLCILYQR-GRCPR-QSCNFAHG 30 9**********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.55E-5 | 4 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.648 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-11 | 6 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 6 | 31 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-5 | 7 | 30 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 468 aa Download sequence Send to blast |
MLGRKLYKTK LCILYQRGRC PRQSCNFAHG DAELRRFAGS FTGRRDNRNG DLRDKLDRRH 60 SPYRRYSPIR DARGHHSFRS HKPISNDRGS SRSRSPIKRS ERRYRKKQRM DGESDISGSL 120 KIDGAKDRKK EDKVSSHDEK DDLEEQLKQI QLDIEMLDDH KSQLEIFLEE KVDEAQKLSS 180 RIEDLESKLN KEQENCKRIT LKIKKFIKAH GRYVKAQEEL KRSQTRLQKL GDQLSSDTLK 240 TSANEEDSSV NVVSDGEPNA DGDNQINPRN DLLQKNVLSA NRRSFVDPAT SEEAKIGNSQ 300 KRERSSDVIS KSEKLTKSEG PAPYLEYNNK GADAAKKVLT SNKSLADNYK HKQGKFDSGS 360 TAPLDKVKSS ESRHLLPSTS MAAHAVDEFI EVIETEEKPG AFETTTDFEN GDLDNRTTKS 420 AYMPPPPPPV TQNAYKQYEG DDEDVDVERV DAEMVDLDIN SEVEIEQI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 102 | 108 | RYRKKQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909653.1 | 0.0 | zinc finger CCCH domain-containing protein 13 isoform X1 | ||||
TrEMBL | A0A2H3YNC5 | 0.0 | A0A2H3YNC5_PHODC; zinc finger CCCH domain-containing protein 13 | ||||
STRING | XP_008801339.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21810.1 | 4e-50 | C3H family protein |