PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 1898aa MW: 205636 Da PI: 5.2401 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 1878 | 1898 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr f+++G+Ck G++C+++H+ XP_010909494.1 1878 ICR-FHENGHCKKGASCNYIHS 1898 688.9999*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.32E-8 | 294 | 354 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.1E-8 | 303 | 361 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 8.653 | 307 | 373 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.1E-7 | 309 | 355 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 9.98E-22 | 309 | 354 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 310 | 370 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.245.10 | 9.4E-27 | 529 | 618 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF47592 | 1.94E-20 | 534 | 613 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 9.1E-16 | 539 | 612 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 0.001 | 548 | 617 | IPR019835 | SWIB domain |
SMART | SM00719 | 1.0E-48 | 673 | 783 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 28.751 | 673 | 806 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 8.5E-33 | 674 | 803 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 3.2E-22 | 678 | 781 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.14E-17 | 1017 | 1075 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 16.067 | 1022 | 1076 | IPR003169 | GYF domain |
CDD | cd00072 | 9.32E-17 | 1022 | 1077 | No hit | No description |
SMART | SM00444 | 3.4E-20 | 1023 | 1078 | IPR003169 | GYF domain |
Pfam | PF02213 | 1.0E-13 | 1024 | 1068 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 4.8E-18 | 1024 | 1076 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 13.563 | 1873 | 1898 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1898 aa Download sequence Send to blast |
MGGPEEEEVH GPPPMNQLSE ENPPPPPVVG EAGILSCEWR EDREAAKGSQ LPVSPALSPS 60 SVFGEDEKCP ALETDAAATC GVAGGDDSLE QEAIQMAVDV VLERQEDPAV PGSPAVFLPP 120 SSGEDKKAPI LETDVAATGG DAEGDDVMKE DFARMAVNMV EPQVDLPCRS SPVASPSSHA 180 EDEEGPVFWP DAATTSGIAG GDDVLEVGAT RMAIDAMEPQ AEPRSLGSPS SSGGGEKKKD 240 LASETDEATI SPFGGGDAVV EEEDEQISAE ATESPIGRVR RGGGRWKRGR PQKAHVGRAL 300 VRRKEEEEVC FICFDGGDLV VCDRRGCPKV YHPSCVNRDE AFFRAKGRWN CGWHICNICE 360 KSSHYICYTC TYSLCKGCIR EARFICVRGT KGFCETCMST VMLIETNEHG NEKKDGVDFD 420 DRSSWEFLFK DYWLDLKGKL SLTLEELKRA RTPQKDSSLI SRNVESTDDL CDAKNDQQAS 480 SDSSSGHPEE RISPRKNEES IFAKKKGKKG SRKTTNKEGL AKEPENTGTS TCKDISWASD 540 ELLEFVAHMK DGDISELSQF DVQALLLEYI KRNNLRDRRR KSQIICDSRL ENLFGKSRVG 600 HFEMLKLLES HFLMKEASPL DTDDNQGGVV DPDPMDVEGN SDASIMTTSD NRRKSRRKVE 660 GKEPQTNLDD FAAIDVHNIR LIYLRRNLME DLLDDIDTFN EKVIGSFVRI RICGVGQRQD 720 VYRLVQVKGT CKAADKYKSG KKTTDVMLEI LNLDKTELIT IDIISNQEFT EEECKRLRQS 780 IKCGFISRLT VGEVQEKARA LQAVRVNDWL ESEKLRLAHL RDRASEKGRS KELRECVEKL 840 RLLNMPEDRN RRLNEVPEIH ADPHMSPDYE TAEEEEEPDS KRHVHADHYS RSRASAFLRK 900 GKELTSPGRG ISISGDNWND SRKNSNIGES SRSILTEGAS NKSASRVGIT NESSWKQGND 960 VHQTRSWEPP KTPTNATGLE TGAWDNNQHG LRPGQSSGVQ PGTPTAFLST GVAVPSNASE 1020 SEKIWHYHDP SGKIQGPFSM VQLRKWSTTG YFPTNLRIWK TFEKQEDSIL LTDALSGKFR 1080 NDLPQCEPAH NSLTDDKQNV ANWKASRNDA NLSTPGINEA AKADRFVTRP SAWSAPKTEV 1140 INPNEGGFGT SSRDQGSSKG MNAGPGQMQG WNGARTAASF TGSPYQPLSH QSSGSRGGNS 1200 GRWNGIQDHG SNWGSNKPMG SHPTSQVYDK PHPQWSSSSH QSSEDMSQVQ TSEFSNQWKN 1260 DSFNLPTAPQ LGSRDSTCEQ GALNNSLPSS ASVQPMISGR GTTPSSNEAH QSSSSSDGGN 1320 PHPAAMASMP NTAEVVDTMG SSQLSDKAVN RGKFQISSHQ KKPSAHESSM TLENLPSLEL 1380 PYGDEVIPPS TDTQLSGGLD KNQCPQSDYT CPASGSEQVS GDVLSSECSE TVPSQLNDRQ 1440 DRRVVWQGQH GLGKKWAEAH DSFADKTGKS LVDGRGSDPC SVVDARDTNL ITESDALEPE 1500 SAPQSEISSG PNLGSESLGW ASYSAPKQKP DSSCPNPPSA ENRSEQNQSP RPEPSLAAPE 1560 CINSHNLRIP SDGKCIEHLM HAPAIKMISS EWSGGANSTF GDSQNVHFVL SDGSKPLASS 1620 QCEASASVEP AQSSNAGLSA VAHVQNTFWG VAPQNPNMGP GSQGNANMNW ATTIQSNMNM 1680 GWGLIAQSNM NVSQGTPAQG FANLNMGFGA PPQANMVVNA GWVPAAPGNT NANPAWGTPF 1740 QGNPSPGTAW GAQVQGSMTV NPGWGTFPQS NTNPNPGLVT PPSGNANQNA SWGAPTQGNM 1800 DTNLSTWRSG QGNMNLTWDP SGGDMNSWNT PQAQAGDRHS GQGGSDSGHS AGRPMWNRIQ 1860 SSGGGGSSRP PSRGQRGICR FHENGHCKKG ASCNYIHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2naa_A | 9e-13 | 305 | 376 | 4 | 72 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909494.1 | 0.0 | zinc finger CCCH domain-containing protein 19 isoform X3 | ||||
TrEMBL | A0A2H3ZEH7 | 0.0 | A0A2H3ZEH7_PHODC; zinc finger CCCH domain-containing protein 19-like isoform X1 | ||||
STRING | XP_008812560.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding |