PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 1925aa MW: 208273 Da PI: 5.2168 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 1905 | 1925 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr f+++G+Ck G++C+++H+ XP_010909493.1 1905 ICR-FHENGHCKKGASCNYIHS 1925 688.9999*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.32E-8 | 294 | 354 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.7E-9 | 303 | 362 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 8.653 | 307 | 373 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.1E-7 | 309 | 355 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 1.01E-21 | 309 | 354 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 310 | 370 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.245.10 | 9.6E-27 | 529 | 618 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF47592 | 1.96E-20 | 534 | 613 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 9.3E-16 | 539 | 612 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 0.001 | 548 | 617 | IPR019835 | SWIB domain |
SMART | SM00719 | 1.0E-48 | 673 | 783 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 28.751 | 673 | 806 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 8.76E-33 | 674 | 803 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 3.3E-22 | 678 | 781 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.15E-17 | 1014 | 1072 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 16.067 | 1019 | 1073 | IPR003169 | GYF domain |
CDD | cd00072 | 9.48E-17 | 1019 | 1074 | No hit | No description |
SMART | SM00444 | 3.4E-20 | 1020 | 1075 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 4.9E-18 | 1021 | 1073 | IPR003169 | GYF domain |
Pfam | PF02213 | 1.1E-13 | 1021 | 1065 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 13.563 | 1900 | 1925 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1925 aa Download sequence Send to blast |
MGGPEEEEVH GPPPMNQLSE ENPPPPPVVG EAGILSCEWR EDREAAKGSQ LPVSPALSPS 60 SVFGEDEKCP ALETDAAATC GVAGGDDSLE QEAIQMAVDV VLERQEDPAV PGSPAVFLPP 120 SSGEDKKAPI LETDVAATGG DAEGDDVMKE DFARMAVNMV EPQVDLPCRS SPVASPSSHA 180 EDEEGPVFWP DAATTSGIAG GDDVLEVGAT RMAIDAMEPQ AEPRSLGSPS SSGGGEKKKD 240 LASETDEATI SPFGGGDAVV EEEDEQISAE ATESPIGRVR RGGGRWKRGR PQKAHVGRAL 300 VRRKEEEEVC FICFDGGDLV VCDRRGCPKV YHPSCVNRDE AFFRAKGRWN CGWHICNICE 360 KSSHYICYTC TYSLCKGCIR EARFICVRGT KGFCETCMST VMLIETNEHG NEKKDGVDFD 420 DRSSWEFLFK DYWLDLKGKL SLTLEELKRA RTPQKDSSLI SRNVESTDDL CDAKNDQQAS 480 SDSSSGHPEE RISPRKNEES IFAKKKGKKG SRKTTNKEGL AKEPENTGTS TCKDISWASD 540 ELLEFVAHMK DGDISELSQF DVQALLLEYI KRNNLRDRRR KSQIICDSRL ENLFGKSRVG 600 HFEMLKLLES HFLMKEASPL DTDDNQGGVV DPDPMDVEGN SDASIMTTSD NRRKSRRKVE 660 GKEPQTNLDD FAAIDVHNIR LIYLRRNLME DLLDDIDTFN EKVIGSFVRI RICGVGQRQD 720 VYRLVQVKGT CKAADKYKSG KKTTDVMLEI LNLDKTELIT IDIISNQEFT EEECKRLRQS 780 IKCGFISRLT VGEVQEKARA LQAVRVNDWL ESEKLRLAHL RDRASEKGRS KELRECVEKL 840 RLLNMPEDRN RRLNEVPEIH ADPHMSPDYE TAEEEEEPDS KRHDHYSRSR ASAFLRKGKE 900 LTSPGRGISI SGDNWNDSRK NSNIGESSRS ILTEGASNKS ASRVGITNES SWKQGNDVHQ 960 TRSWEPPKTP TNATGLETGA WDNNQHGLRP GQSSGVQPGT PTAFLSTGVA VPSNASESEK 1020 IWHYHDPSGK IQGPFSMVQL RKWSTTGYFP TNLRIWKTFE KQEDSILLTD ALSGKFRNDL 1080 PQCEPAHNSL TDDKQNVANW KASRNDANLS TPGINEAAKA DRFVTRPSAW SAPKTEVINP 1140 NEGGFGTSSR DQGSSKGMNA GPGQMQGWNG ARTAASFTGS PYQPLSHQSS GSRGGNSGRW 1200 NGIQDHGSNW GSNKPMGSHP TSQVYDKPHP QWSSSSHQSS EDMSQVQTSE FSNQWKNDSF 1260 NLPTAPQLGS RDSTCEQGAL NNSLPSSASV QPMISGRGTT PSSNEAHQSS SSSGMSSKTT 1320 MSDSVGPSGS SAVTDMLKQT VTADGGNPHP AAMASMPNTA EVVDTMGSSQ LSDKAVNRGK 1380 FQISSHQKKP SAHESSMTLE NLPSLELPYG DEVIPPSTDT QLSGGLDKNQ CPQSDYTCPA 1440 SGSEQVSGDV LSSECSETVP SQLNDRQDRR VVWQGQHGLG KKWAEAHDSF ADKTGKSLVD 1500 GRGSDPCSVV DARDTNLITE SDALEPESAP QSEISSGPNL GSESLGWASY SAPKQKPDSS 1560 CPNPPSAENR SEQNQSPRPE PSLAAPECIN SHNLRIPSDG KCIEHLMHAP AIKMISSEWS 1620 GGANSTFGDS QNVHFVLSDG SKPLASSQCE ASASVEPAQS SNAGLSAVAH VQNTFWGVAP 1680 QNPNMGPGSQ GNANMNWATT IQSNMNMGWG LIAQSNMNVS QGTPAQGFAN LNMGFGAPPQ 1740 ANMVVNAGWV PAAPGNTNAN PAWGTPFQGN PSPGTAWGAQ VQGSMTVNPG WGTFPQSNTN 1800 PNPGLVTPPS GNANQNASWG APTQGNMDTN LSTWRSGQGN MNLTWDPSGG DMNSWNTPQA 1860 QAGDRHSGQG GSDSGHSAGR PMWNRIQSSG GGGSSRPPSR GQRGICRFHE NGHCKKGASC 1920 NYIHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2naa_A | 1e-12 | 305 | 376 | 4 | 72 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909493.1 | 0.0 | zinc finger CCCH domain-containing protein 19 isoform X2 | ||||
TrEMBL | A0A3Q0HMD5 | 0.0 | A0A3Q0HMD5_PHODC; zinc finger CCCH domain-containing protein 19-like isoform X2 | ||||
STRING | XP_008812560.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding |