PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 1928aa MW: 208581 Da PI: 5.2426 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.2e-06 | 1908 | 1928 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr f+++G+Ck G++C+++H+ XP_010909492.1 1908 ICR-FHENGHCKKGASCNYIHS 1928 688.9999*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.32E-8 | 294 | 354 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 5.6E-9 | 303 | 362 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 8.653 | 307 | 373 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.1E-7 | 309 | 355 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 1.01E-21 | 309 | 354 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 310 | 370 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.245.10 | 9.6E-27 | 529 | 618 | IPR003121 | SWIB/MDM2 domain |
SuperFamily | SSF47592 | 1.96E-20 | 534 | 613 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 9.3E-16 | 539 | 612 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 0.001 | 548 | 617 | IPR019835 | SWIB domain |
SMART | SM00719 | 1.0E-48 | 673 | 783 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 28.751 | 673 | 806 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 8.76E-33 | 674 | 803 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 3.3E-22 | 678 | 781 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.16E-17 | 1017 | 1075 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 16.067 | 1022 | 1076 | IPR003169 | GYF domain |
CDD | cd00072 | 9.50E-17 | 1022 | 1077 | No hit | No description |
SMART | SM00444 | 3.4E-20 | 1023 | 1078 | IPR003169 | GYF domain |
Pfam | PF02213 | 1.1E-13 | 1024 | 1068 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 4.9E-18 | 1024 | 1076 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 13.563 | 1903 | 1928 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1928 aa Download sequence Send to blast |
MGGPEEEEVH GPPPMNQLSE ENPPPPPVVG EAGILSCEWR EDREAAKGSQ LPVSPALSPS 60 SVFGEDEKCP ALETDAAATC GVAGGDDSLE QEAIQMAVDV VLERQEDPAV PGSPAVFLPP 120 SSGEDKKAPI LETDVAATGG DAEGDDVMKE DFARMAVNMV EPQVDLPCRS SPVASPSSHA 180 EDEEGPVFWP DAATTSGIAG GDDVLEVGAT RMAIDAMEPQ AEPRSLGSPS SSGGGEKKKD 240 LASETDEATI SPFGGGDAVV EEEDEQISAE ATESPIGRVR RGGGRWKRGR PQKAHVGRAL 300 VRRKEEEEVC FICFDGGDLV VCDRRGCPKV YHPSCVNRDE AFFRAKGRWN CGWHICNICE 360 KSSHYICYTC TYSLCKGCIR EARFICVRGT KGFCETCMST VMLIETNEHG NEKKDGVDFD 420 DRSSWEFLFK DYWLDLKGKL SLTLEELKRA RTPQKDSSLI SRNVESTDDL CDAKNDQQAS 480 SDSSSGHPEE RISPRKNEES IFAKKKGKKG SRKTTNKEGL AKEPENTGTS TCKDISWASD 540 ELLEFVAHMK DGDISELSQF DVQALLLEYI KRNNLRDRRR KSQIICDSRL ENLFGKSRVG 600 HFEMLKLLES HFLMKEASPL DTDDNQGGVV DPDPMDVEGN SDASIMTTSD NRRKSRRKVE 660 GKEPQTNLDD FAAIDVHNIR LIYLRRNLME DLLDDIDTFN EKVIGSFVRI RICGVGQRQD 720 VYRLVQVKGT CKAADKYKSG KKTTDVMLEI LNLDKTELIT IDIISNQEFT EEECKRLRQS 780 IKCGFISRLT VGEVQEKARA LQAVRVNDWL ESEKLRLAHL RDRASEKGRS KELRECVEKL 840 RLLNMPEDRN RRLNEVPEIH ADPHMSPDYE TAEEEEEPDS KRHVHADHYS RSRASAFLRK 900 GKELTSPGRG ISISGDNWND SRKNSNIGES SRSILTEGAS NKSASRVGIT NESSWKQGND 960 VHQTRSWEPP KTPTNATGLE TGAWDNNQHG LRPGQSSGVQ PGTPTAFLST GVAVPSNASE 1020 SEKIWHYHDP SGKIQGPFSM VQLRKWSTTG YFPTNLRIWK TFEKQEDSIL LTDALSGKFR 1080 NDLPQCEPAH NSLTDDKQNV ANWKASRNDA NLSTPGINEA AKADRFVTRP SAWSAPKTEV 1140 INPNEGGFGT SSRDQGSSKG MNAGPGQMQG WNGARTAASF TGSPYQPLSH QSSGSRGGNS 1200 GRWNGIQDHG SNWGSNKPMG SHPTSQVYDK PHPQWSSSSH QSSEDMSQVQ TSEFSNQWKN 1260 DSFNLPTAPQ LGSRDSTCEQ GALNNSLPSS ASVQPMISGR GTTPSSNEAH QSSSSSGMSS 1320 KTTMSDSVGP SGSSAVTDML KQTVTADGGN PHPAAMASMP NTAEVVDTMG SSQLSDKAVN 1380 RGKFQISSHQ KKPSAHESSM TLENLPSLEL PYGDEVIPPS TDTQLSGGLD KNQCPQSDYT 1440 CPASGSEQVS GDVLSSECSE TVPSQLNDRQ DRRVVWQGQH GLGKKWAEAH DSFADKTGKS 1500 LVDGRGSDPC SVVDARDTNL ITESDALEPE SAPQSEISSG PNLGSESLGW ASYSAPKQKP 1560 DSSCPNPPSA ENRSEQNQSP RPEPSLAAPE CINSHNLRIP SDGKCIEHLM HAPAIKMISS 1620 EWSGGANSTF GDSQNVHFVL SDGSKPLASS QCEASASVEP AQSSNAGLSA VAHVQNTFWG 1680 VAPQNPNMGP GSQGNANMNW ATTIQSNMNM GWGLIAQSNM NVSQGTPAQG FANLNMGFGA 1740 PPQANMVVNA GWVPAAPGNT NANPAWGTPF QGNPSPGTAW GAQVQGSMTV NPGWGTFPQS 1800 NTNPNPGLVT PPSGNANQNA SWGAPTQGNM DTNLSTWRSG QGNMNLTWDP SGGDMNSWNT 1860 PQAQAGDRHS GQGGSDSGHS AGRPMWNRIQ SSGGGGSSRP PSRGQRGICR FHENGHCKKG 1920 ASCNYIHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2naa_A | 1e-12 | 305 | 376 | 4 | 72 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909492.1 | 0.0 | zinc finger CCCH domain-containing protein 19 isoform X1 | ||||
TrEMBL | A0A2H3ZEH7 | 0.0 | A0A2H3ZEH7_PHODC; zinc finger CCCH domain-containing protein 19-like isoform X1 | ||||
STRING | XP_008812560.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7179 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 0.0 | nucleic acid binding;zinc ion binding;DNA binding |