PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010909458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 156aa MW: 18161.4 Da PI: 5.0246 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 14 | 48 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgR 35 +g+W++eEd +l++ ++++G+g +W + +++ g +R XP_010909458.1 14 KGPWSPEEDSKLKEFIEKYGTGgNWIALPHKAG-KR 48 79***********************99999998.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.14E-6 | 4 | 48 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 5 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.399 | 9 | 48 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.3E-7 | 14 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-4 | 16 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LPHKAGKRVI EVDHLYFLAA 60 PSVAQVQLGL LAQMHWLLER HRQFEKHNQH SKRCHQLEKH WLPERYHELG RALHLGETEE 120 EEPECVEIEE GEEVYEADPK LAEELEEDED VLGYIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-26 | MYB family protein |